Scaffold deepsgr__Contig_1001

Overview

Basic Information

• Taxon OID: 2199352025
• Scaffold ID: deepsgr__Contig_1001
• Source Dataset Name: Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4171
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location

• Location Name: United Kingdom Rothamsted
• Coordinates
  • Lat. (^o): 56.03
  • Long. (^o): -2.82

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018465	Metagenome / Metatranscriptome	235	Y
F090935	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
deepsgr_01577760	F090935	N/A	VLEGIPPEEIFEGSSEEEASSWINTGGQAWLEERRRKRNAWR
deepsgr_01577770	F018465	AGG	MSTKSFSYHELMSGKINRMRLEALAKSGKLNEETLARIGHVGRFYQRISKACPDPNIKISDVLTGDELQKFWNETAGEGSEIGQCPLVH