Scaffold deeps_contig68164.41429

Overview

Basic Information

• Taxon OID: 2199352024
• Scaffold ID: deeps_contig68164.41429
• Source Dataset Name: Bare-fallow DEEP SOIL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1542
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rothamsted, Uk, For Project Deep Soil

Source Dataset Sampling Location

• Location Name: United Kingdom Rothamsted
• Coordinates
  • Lat. (^o): 56.03
  • Long. (^o): -2.82

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032750	Metagenome / Metatranscriptome	179	Y
F059397	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
deeps_00433430	F032750	GAGG	VADADRDLESATAAERDLEDSVRDTEAQLADLRQRLAEARRRSYRAESRQQRAAGQLSRLKE
deeps_00433450	F059397	GGAGG	VNTEERQLAEMLHRVTPEPPRRVTVEDVAFRLASEPGRKPR