Scaffold CgraS_DRAFT__Contig_2267

Overview

Basic Information

• Taxon OID: 2199352023
• Scaffold ID: CgraS_DRAFT__Contig_2267
• Source Dataset Name: C. gracilis enrichment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Eurofins Medigenomix GmbH
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51590
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (36.84%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Marine Media → Unclassified → Chaetoceros Gracilis Enriched → Chaetoceros Gracilis Enriched Algal Communities From Idaho National Lab, Usa

Source Dataset Sampling Location

• Location Name: Idaho National Lab, Idaho Falls
• Coordinates
  • Lat. (^o): 43.4666667
  • Long. (^o): -112.0333333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
CgraS_DRAFT_00278600	F051162	N/A	MPLVKLFARKTLSKPVNLSSLQQKLCSIWNTKPDTTKLILTRVDDWTNDSFQEDIYVDIRAYGKKERTRDMVMDGMQQVQKAFGEEGLVANVRLEVYDGEKYFHLPPPPSTPQN