Scaffold 2200032533

Overview

Basic Information

• Taxon OID: 2199352005
• Scaffold ID: 2200032533
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2559
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella aerogenes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030759	Metagenome / Metatranscriptome	184	Y
F073553	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
2200241794	F030759	N/A	MINKISWIGTLSSIIGAFIVASQLFFLGYCFFIIGSLSWLIVGYYRKDKSLITLNGTFFLANILGLYNSF
2200241796	F073553	AGG	MTEQEFYAQIQEDYYNEFAGAELSEIFICTNDHDEFFEFDDVPF