Scaffold 2199913691

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199913691
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10500
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045097	Metagenome / Metatranscriptome	153	Y
F059006	Metagenome / Metatranscriptome	134	Y
F068832	Metagenome / Metatranscriptome	124	Y
F070111	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
2200099453	F068832	GAGG	MIEDSAKNNLLEIMKWGGTACVIVAATCRAFEFHTVDLILSIIGAGVWGIAAYEMKDKPLMVVNGFITAILLYGVVK
2200099459	F070111	AGAAGG	MTKISVELDIDQFDKLVVEELIRTRQTFLNDLGANNHVFVWGDQEADDAEIQKHIDSADQLIKWFGTPEQIEEVFGNEDG
2200099460	F045097	GAGG	MKTDDIKGKMIEAIPYVAVFGIAALAVYGITKIVQSLDDVDIPLDWGQDAYLTELCRNSRED
2200099468	F059006	GAGG	MRPTFTDAERAEIESVKDIAQKKLRELLADLPVDTYPFFKDCILTGGCFASLLLDEEVHDWDVYLRDSVTVSRFESFVLSDTPTLNEVAGVTSGYTLITKVGGKLVTANAITFKNGLQVITRTGKEHRETFDFVHTMPYFDMAKQQLFISRQQYDSIKNKKLIVNPKHLVLVNQWRADKFMGRGWSFR