Scaffold 2199908451

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199908451
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2852
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F045097	Metagenome / Metatranscriptome	153	Y
F070111	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
2200090288	F023351	GGAGG	MENKQPKQAKGGVFAPTDYPVIKRALHAYLFECMRVEGYSERDPHPDVATISNLLHRLGRIQS
2200090291	F045097	N/A	MKTDDIKGKMIEAIPYVAVFGIAALAVYGVTKLVEATKELDFPLDFGNDEYLTGLAENSRED
2200090292	F070111	AGAAGG	MTKISVELDIDQFDKLVVEELIRTRDAFLNDLGANNHVFVYGDSEADDIEIQKHIDSTDQLIKWFGTPEQVKRVFGDED