Scaffold 2199905357

Overview

Basic Information

• Taxon OID: 2199352004
• Scaffold ID: 2199905357
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14006
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013890	Metagenome	267	Y
F017479	Metagenome / Metatranscriptome	240	Y
F019137	Metagenome / Metatranscriptome	231	Y
F067734	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
2200084116	F019137	AGG	MAKLKIVRTDGSELEGEITPAVEYSFELHHKLGFHRAFREKEEQTMVYWLAWEITRRSGETVKPFGMDFIETLKSVEVLDSDPLA
2200084123	F017479	AGGAG	MNELKTAAGSWARAFLVAAISMYAAGVTDPQALIAAGIASILPPVLRYLSPNDPSMGIKK
2200084126	F067734	AGG	MANTDKLLLICMLGMIIGFIMITIDVQRRSYEKGVRDGYHRGRSIKGEE
2200084130	F013890	AGG	MGHVEYFDETTGAWTNLEDVPMFDTINCQLCNEPTEAHDIVAEIKFKDDQPIVGTWQCRKCKAVNG