Scaffold KCEPM_contig00149

Overview

Basic Information

• Taxon OID: 2189573024
• Scaffold ID: KCEPM_contig00149
• Source Dataset Name: Echo Passage metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Arizona Genomics Institute
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 2441
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Source Dataset Sampling Location

• Location Name: Kartchner Caverns, Benson, Arizona, USA
• Coordinates
  • Lat. (^o): 31.837801
  • Long. (^o): -110.350292

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002666	Metagenome / Metatranscriptome	539	Y

Sequences

Protein ID	Family	RBS	Sequence
KCEPM_02328780	F002666	AGGA	MRRFGRQCRGQGKVFVTLVRQTEKQLLETGQPVLPLAQAAQACVQSAAHLAEDQRARLATTLTAALAAHHQIATQSRRLTTGKPLTQCKIVNAYDPTIAPICKGKSNCPTQFGRKPGIIAEPASGFIFAFQLPVGNPSDASYVMPLVDKVQHALGRVASRPTLAIHSLAGDLALNDPTVRQTLHARGILTVGIPHTVEPLPPSPTPAEVRQMLTAAGLHSKRTPHQVQLACACGYSRPVIESIIASLLCRGAARISYKGHRGAIIHTGMAIMAHNAATLVRIHQQQLSKRAQKFRRLLRLKHHNVNQFKVSKN