2189573024: Echo Passage metagenome

Overview

Basic Information

• IMG/M Taxon OID: 2189573024
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047522 | Gp0052336 | Ga0011089
• Sample Name: Echo Passage metagenome
• Sequencing Status: Finished
• Sequencing Center: Arizona Genomics Institute
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 138499921
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → cave wall → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Kartchner Caverns, Benson, Arizona, USA
• Coordinates
  • Lat. (^o): 31.837801
  • Long. (^o): -110.350292
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002666	Metagenome / Metatranscriptome	539	Y
F009387	Metagenome / Metatranscriptome	318	N
F015813	Metagenome / Metatranscriptome	252	Y
F019464	Metagenome	229	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
GG70X8M02GXDWX	All Organisms → cellular organisms → Archaea	520
GG70X8M02HCC7S	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514
GG70X8M02JYTU8	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	506
KCEPM_contig00149	All Organisms → cellular organisms → Bacteria	2441

Sequences

Scaffold ID	Protein ID	Family	Sequence
GG70X8M02GXDWX	KCEPM_01667720	F009387	EEPVIYPAFVLAKFDTLRDEVLSRLGLHRGFPPRNEKRKRKEYAEALLRAFLPQTLSQIRGGKVAGVSMDQAAYFLSWVKTERPEGMEAVGAPKIIRTGFRPGGGGDPDFSYDEYVEFIEHFRDLAHKIPDEVLEAEKVQAAATLT
GG70X8M02HCC7S	KCEPM_01885330	F019464	MAAFLRVLGIVVVATGLGTAAAAGWLLAGDAHFREVSAAYARHPEHALFQAEYVAAAARHYGLLAGVVGGLLGGLALGGMLLALGELLRRIPRG
GG70X8M02JYTU8	KCEPM_02314630	F015813	KTMTTLSHTLRAKCRKALLAGVALSVLLTPTFARSAEREGSVLFFSLEDLQQVLSHPSLPSFSQLLPSFEWRERPEAGEQDGRLERNSRWGNGLGIDGYTRPGTRPLWGY
KCEPM_contig00149	KCEPM_02328780	F002666	MRRFGRQCRGQGKVFVTLVRQTEKQLLETGQPVLPLAQAAQACVQSAAHLAEDQRARLATTLTAALAAHHQIATQSRRLTTGKPLTQCKIVNAYDPTIAPICKGKSNCPTQFGRKPGIIAEPASGFIFAFQLPVGNPSDASYVMPLVDKVQHALGRVASRPTLAIHSLAGDLALNDPTVRQTLHARGILTVGIPHTVEPLPPSPTPAEVRQMLTAAGLHSKRTPHQVQLACACGYSRPVIESIIASLLCRGAARISYKGHRGAIIHTGMAIMAHNAATLVRIHQQQLSKRAQKFRRLLRLKHHNVNQFKVSKN