Scaffold F62QY1Z01D8BLL

Overview

Basic Information

• Taxon OID: 2170459004
• Scaffold ID: F62QY1Z01D8BLL
• Source Dataset Name: Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: 454 Life Sciences
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 501
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location

• Location Name: Rothamsted, Harpenden, UK
• Coordinates
  • Lat. (^o): 51.804241
  • Long. (^o): -0.372114
  • Depth (m): 0 to .21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057343	Metagenome / Metatranscriptome	136	Y
F106009	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
E4B_00785980	F106009	N/A	MKPPAASDGMVVYDGVSKFFPVRARPGREDSAELMVALDRINATVRK
E4B_00785990	F057343	GAG	VNGGLDPAIEEFTADLNVKLGNLPVAAPAKDVLEPRFVERALATLGNYQSK