Scaffold W1_contig01448

Overview

Basic Information

• Taxon OID: 2170459001
• Scaffold ID: W1_contig01448
• Source Dataset Name: soil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New Mexico
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 937
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Polar Desert → Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: McMurdo Dry Valleys (Wright Valley), Antarctica
• Coordinates
  • Lat. (^o): 77.4475
  • Long. (^o): 162.676389
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008799	Metagenome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
W1_0448.00000090	F008799	GGA	MATPLLRRLSTGNGWSHKVIHDAHGRLEAVTFVRVGPVWTDSVAIAGEDQTLAMRHRTRESDLIVPAELPSESRAVWQRHGRCADVLAELFELPAPAR