2170459001: soil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica

Overview

Basic Information

• IMG/M Taxon OID: 2170459001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047452 | Gp0051901 | Ga0011276
• Sample Name: soil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica
• Sequencing Status: Permanent Draft
• Sequencing Center: University of New Mexico
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6261012
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Polar Desert → Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar desert biome → desert → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: McMurdo Dry Valleys (Wright Valley), Antarctica
• Coordinates
  • Lat. (^o): 77.4475
  • Long. (^o): 162.676389
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000584	Metagenome / Metatranscriptome	1007	Y
F008799	Metagenome	328	Y
F066284	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
W1_contig00354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	2207
W1_contig00594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1619
W1_contig01448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	937
W1_contig04542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
W1_contig00354	W1_0354.00000050	F066284	MRVDYDSTANAISIAISDTSHAEKADEVHSRAIVALAGGKPVEVQLLYPDLGISEPLAAVADRYELDLEALHAAARSALAAPDRVVVLEVAVRTPA
W1_contig00594	W1_0594.00000010	F000584	MARKTHHKHSSTKGYRRLLDGLADLEGVHSVATGRVKPRMGSGRPVAPISKVRTTESGLSITINADGAIVDAYVVTDRPAEVAAAIAERGWSASS
W1_contig01448	W1_0448.00000090	F008799	MATPLLRRLSTGNGWSHKVIHDAHGRLEAVTFVRVGPVWTDSVAIAGEDQTLAMRHRTRESDLIVPAELPSESRAVWQRHGRCADVLAELFELPAPAR
W1_contig04542	W1_0542.00000290	F008799	VSGSSYPATPLLRRLTAGNGWRHDVIRDAHGRLEAVTYVRFGPVWTDSVAIAGEDQTLAMRHRTNDDRLILPTGLPSESRAVWRRHGRCADVLTELFELPDP