NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold W1_contig00354

Scaffold W1_contig00354


Overview

Basic Information
Taxon OID2170459001 Open in IMG/M
Scaffold IDW1_contig00354 Open in IMG/M
Source Dataset Namesoil microbial communities from McMurdo Dry Valleys (Wright Valley), Antarctica
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New Mexico
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2207
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Polar Desert → Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameMcMurdo Dry Valleys (Wright Valley), Antarctica
CoordinatesLat. (o)77.4475Long. (o)162.676389Alt. (m)Depth (m).1
Location on Map
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Associated Families

Sequences


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