Scaffold T1_contig00540

Overview

Basic Information

• Taxon OID: 2170459000
• Scaffold ID: T1_contig00540
• Source Dataset Name: soil microbial communities from McMurdo Dry Valleys (Taylor Valley), Antarctica
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New Mexico
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 683
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Polar Desert → Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: McMurdo Dry Valleys (Taylor Valley), Antarctica
• Coordinates
  • Lat. (^o): 77.735556
  • Long. (^o): 162.328611

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050191	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
T1_0540.00000020	F050191	GGAG	MSEADRMEHENSSAEALDDRGTDVQGGLTLLQKLRDSGFDSDNQKFALALGRPVEEVEAWVNGTEPPDDDILMKARGIAKQRGVEIE