2170459000: soil microbial communities from McMurdo Dry Valleys (Taylor Valley), Antarctica

Overview

Basic Information

• IMG/M Taxon OID: 2170459000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047452 | Gp0052389 | Ga0011275
• Sample Name: soil microbial communities from McMurdo Dry Valleys (Taylor Valley), Antarctica
• Sequencing Status: Permanent Draft
• Sequencing Center: University of New Mexico
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1663228
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Polar Desert → Polar Desert Microbial Communities From Mcmurdo Dry Valleys, Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar desert biome → desert → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: McMurdo Dry Valleys (Taylor Valley), Antarctica
• Coordinates
  • Lat. (^o): 77.735556
  • Long. (^o): 162.328611
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050191	Metagenome / Metatranscriptome	145	Y
F069276	Metagenome	124	Y
F083227	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
T1_contig00540	All Organisms → cellular organisms → Bacteria → Acidobacteria	683
T1_contig00709	All Organisms → cellular organisms → Bacteria → Acidobacteria	631
T1_contig00904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586

Sequences

Scaffold ID	Protein ID	Family	Sequence
T1_contig00540	T1_0540.00000020	F050191	MSEADRMEHENSSAEALDDRGTDVQGGLTLLQKLRDSGFDSDNQKFALALGRPVEEVEAWVNGTEPPDDDILMKARGIAKQRGVEIE
T1_contig00709	T1_0709.00000020	F069276	RKFHPAIAAIKSGDSEGLKSLVSQDPSLATSRSSRSHPTLLQCLVLDALDLPNKVELAKVLIDAGAEVNGPLCAAGSIGNVEVAAALLDAGALIDGTGGWSPLEEALYWGTMVLSTCC
T1_contig00904	T1_0904.00000010	F083227	MDDESTELEPKKKSLFPISAEDIVDNALLNLDENQARRVTEKAADEVVRLAVEKRKAEYRNLAAQDEMQNLINNANLL