NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FOassembled-_contig26827

Scaffold FOassembled-_contig26827


Overview

Basic Information
Taxon OID2162886015 Open in IMG/M
Scaffold IDFOassembled-_contig26827 Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - FO (Mercury 0.02g/kg) assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)601
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameUnited Kingdom: Rothamsted, Harpenden
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042363Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
FOassembled-_0827.00001940F042363N/AFASNAFAVLRSPYPSKPSPPDRIITIIIGQDKRDLVRTTHRESK

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