Scaffold PRSSGFe2_Sequence0000001033

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PRSSGFe2_Sequence0000001033

Scaffold PRSSGFe2_Sequence0000001033

Overview

Basic Information
Taxon OID	2162886008 Open in IMG/M
Scaffold ID	PRSSGFe2_Sequence0000001033 Open in IMG/M
Source Dataset Name	Soil microbial communities from Puerto Rico rain forest, that decompose switchgrass - Feedstock-adapted consortia SG + Fe
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12852
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Soil → Soil Microbial Communities From Puerto Rico Rain Forest, That Decompose Switchgrass

Source Dataset Sampling Location
Location Name	Luquillo LTER tropical forest, Puerto Rico
Coordinates	Lat. (^o)	18.3724	Long. (^o)	-65.7166	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088999	Metagenome / Metatranscriptome	109	Y
F096286	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
PRSSGFe2_0033.00001310	F096286	AGGTGG	VNRRRVKTVRLKHEHSALIDPSMKGKKVDHIRFSQAERSIVYVSVVFDDRTEWSIAIESFSLPTARVSHFVTIEEDPIAETGLMFLPDDSSSYPQFDQIQQPPKQRKPSKKSKK
PRSSGFe2_0033.00001350	F088999	GAGG	MNNKLLLMLCAFLAVAVSATAQETSDKFAIFVTGVGDATPVAQSLVKKLNASKPFEVVSKNDIAKVVVLVSCSSRKQTDPFLCMYVAHFNGPAFKTFLGGGMWAATNADAVSDNFLASIAQDIVERFDSTSKENLREALQACLLMTDSKCNVPDPLQKEFDAKQLTLGQYLLKKNQ

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