Scaffold NODE_29229_length_3637_cov_4.091284

Overview

Basic Information

• Taxon OID: 2140918032
• Scaffold ID: NODE_29229_length_3637_cov_4.091284
• Source Dataset Name: Bovine rumen microbial communities from Vernon, TX, USA, Sample 669
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Texas A and M University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3679
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities From Vernon, Tx, Usa

Source Dataset Sampling Location

• Location Name: Vernon, Texas
• Coordinates
  • Lat. (^o): 34.154
  • Long. (^o): -99.264

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057003	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
RumX_01261970	F057003	N/A	MANFIDLTGLTYCGKEAQEIFSKDIYDIDLRQYGITFWDNVKGKMKLYTGEIGDAWQVYTCPFTPAGAASLAEAYIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFDKLRKKMAKEYQEIFWQGDTGRTGTTKAYLKVTDGIEKKLSALPSGNTVELSAITIGNVIEQVEKVILKGLEVAANAEVDTEGYKVFMNHNDVRMLEIALGKLCCGNSINDRFANYGRENGRIFVMGYEIVPSMISANKIIFGPARNLVLGYDTFDSHIEYKLIDMRETTGDNMFRVLAISNIAVGIIMPELFVFAEV