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Sample 2140918032
2140918032: Bovine rumen microbial communities from Vernon, TX, USA, Sample 669
Overview
| Basic Information |
| IMG/M Taxon OID | 2140918032 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0046171 | Gp0052340 | Ga0011126 |
| Sample Name | Bovine rumen microbial communities from Vernon, TX, USA, Sample 669 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Texas A and M University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 97713687 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella ruminicola | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Bovine Rumen Microbial Communities From Vernon, Tx, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Microbial Communities From Vernon, Tx, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information |
| Location | Vernon, Texas |
| Coordinates | Lat. (o) | 34.154 | Long. (o) | -99.264 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F057003 | Metagenome / Metatranscriptome | 137 | Y |
| F081939 | Metagenome / Metatranscriptome | 114 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| NODE_29229_length_3637_cov_4.091284 | RumX_01261970 | F057003 | MANFIDLTGLTYCGKEAQEIFSKDIYDIDLRQYGITFWDNVKGKMKLYTGEIGDAWQVYTCPFTPAGAASLAEAYIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFDKLRKKMAKEYQEIFWQGDTGRTGTTKAYLKVTDGIEKKLSALPSGNTVELSAITIGNVIEQVEKVILKGLEVAANAEVDTEGYKVFMNHNDVRMLEIALGKLCCGNSINDRFANYGRENGRIFVMGYEIVPSMISANKIIFGPARNLVLGYDTFDSHIEYKLIDMRETTGDNMFRVLAISNIAVGIIMPELFVFAEV |
| NODE_77885_length_636_cov_4.899371 | RumX_01894570 | F081939 | MVKKKEKALTKREKVGMLADKLNEAINSCKLEPTEELDIFAESVALLIAYWGKISDWSPIEKASYVGYVTTTVLEKGLDAEIKSFEEHRKSMKPQIGN |
