Scaffold contig16338

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold contig16338

Scaffold contig16338

Overview

Basic Information
Taxon OID	2140918027 Open in IMG/M
Scaffold ID	contig16338 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	623
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location Name	Deep Lake Antarctica
Coordinates	Lat. (^o)	-68.54	Long. (^o)	78.18	Alt. (m)		Depth (m)	36
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089594	Metagenome	109	N
F104106	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
ADL36m2_01288780	F104106	N/A	GWVVVYLVSYRVDDIDMLGGRSDYLCERLCCMVVVASDL
ADL36m2_01288790	F089594	GGAGG	VYAVHALLVWSWERVASWLVGAGSERQVIAAVCGSGVGDVLIESWFLFVWLNTLCE

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