Scaffold ConsensusfromContig31470

Overview

Basic Information

• Taxon OID: 2140918007
• Scaffold ID: ConsensusfromContig31470
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1242
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049308	Metagenome	147	Y
F066982	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
A_all_C_01459770	F066982	GGA	MIYTGFSMDPQTFEDSPIEQMDPVECPACRQMHRWNKKDARFERDPNE
A_all_C_01459780	F049308	N/A	YVVMSILINGSSAPVRAEPARAPQYVEAPEITPEPTTEAVNEPAMAIGILPPAVASTPAASTASSALINIKVADTKGASIQARESLQYAFVLPETDQKCKLVGSTRGIGGFGRNIEIFLLTDDDYLFWHANPAAIPPSEWETFRGSETTLDYALRGPGTYHFVVSNQMSPTPQTVAVKAQVKCAR