Scaffold contig00388

Overview

Basic Information

• Taxon OID: 2140918005
• Scaffold ID: contig00388
• Source Dataset Name: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-225-485cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1147
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0678
  • Long. (^o): -145.54687
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019836	Metagenome / Metatranscriptome	227	Y
F062159	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
ASHM485C_02158380	F019836	N/A	MQKANLELPVKQFHQLHDLLGDILDHESETNDFNMENSDIELIEDIRTELFNQIPDEKTYTDYALTGRSSNPSIQPGKLYKIVEKTSKYGFQLEVEDGEIIFCLFNGCAFLTVEIGPLLT
ASHM485C_02158390	F062159	N/A	MEDLTHYIEIDWSGVCEDYDLKHGDISPHQTFEIDHALNKINEVLNEFIKQNR