NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold contig01593

Scaffold contig01593


Overview

Basic Information
Taxon OID2140918001 Open in IMG/M
Scaffold IDcontig01593 Open in IMG/M
Source Dataset NameHot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - OSP_D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2344
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameOne Hundred Springs Plain, Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.711389Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F085905Metagenome111N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
OSPD_00646710F085905N/AMEEKLSFPSSKLTQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKDFEYGLIYVYSNSRVDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHTRK
OSPD_00646720F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSASRRNQRAVNGFAILKQVQQTVSDYLNEVSEAMKKPIVAQLRVEFLGIAMAFLKASNEGLNSYALTGRMAQIATLKATDIIHTTTLTCAEVGEIINGMLKKLSGVTADPLTFTEDDGICEATVANPLTKLSVASASTGYTVSLTDILKAKTPEEVLMAK
OSPD_00646750F087445N/ALLNMSEYDLKRVFKMIPIDKRLMLALDTIQEYQNLRSKFDNLFNAFAMNSPKVKEVMENAKKNRKPLDRLADMFMDLIETMLKSKAMTLTDEDREKLREKVREMIESEE

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