Scaffold A5_v_NODE_16964_len_5334_cov_7_798838

Overview

Basic Information

• Taxon OID: 2124908036
• Scaffold ID: A5_v_NODE_16964_len_5334_cov_7_798838
• Source Dataset Name: Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5384
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044207	Metagenome / Metatranscriptome	155	Y
F068797	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
A5_v_00289080	F068797	N/A	MALPGSDEPASISQDEARQELFGRGPSKAGMEIYEVIAIVLGIVGAAIAFEEIDNWSQWVVLAAIIVTVIGFMIAVSPNRRDG
A5_v_00289090	F044207	AGGAGG	MANTDITQRSQYERSDLLAGGEGIRRGSEKGSRIYSVIALIIGIALCVAALSTIESWAQWLVLGVIVVTTVAIMAAIGPNRKGSGAQFKVGR