Scaffold t454_GJGVOYN01BVNEF

Overview

Basic Information

• Taxon OID: 2124908015
• Scaffold ID: t454_GJGVOYN01BVNEF
• Source Dataset Name: Tongue_dorsum_contig300
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Los Alamos National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 513
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Tongue → Human Tongue Microbial Communities From Los Alamos National Lab, Usa

Source Dataset Sampling Location

• Location Name: Houston, TX
• Coordinates
  • Lat. (^o): 29.774
  • Long. (^o): -95.361032
  • Depth (m): 95.383

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051213	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
t454_03865640	F051213	N/A	LLWAVVMALTFVLTSCDPFSKNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK