2124908015: Tongue_dorsum_contig300

Overview

Basic Information

• IMG/M Taxon OID: 2124908015
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046825 | Gp0052290 | Ga0011164
• Sample Name: Tongue_dorsum_contig300
• Sequencing Status: Permanent Draft
• Sequencing Center: Los Alamos National Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 406291643
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Tongue Microbial Communities From Los Alamos National Lab, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Tongue → Human Tongue Microbial Communities From Los Alamos National Lab, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: Houston, TX
• Coordinates
  • Lat. (^o): 29.774
  • Long. (^o): -95.361032
  • Alt. (m): N/A
  • Depth (m): 95.383

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F051213	Metagenome	144	N
F089055	Metagenome	109	Y
F094007	Metagenome	106	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
t454_GJGVOYN01BKKO0	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	523
t454_GJGVOYN01BVNEF	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	513
t454_GJGVOYN01C0G2I	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	505
t454_GJGVOYN01C9DRZ	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	501
t454_GJGVOYN01CB9W4	Not Available	502
t454_GJGVOYN01CBAVO	Not Available	507
t454_GJGVOYN01EDBLH	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
t454_GJGVOYN01BKKO0	t454_01797880	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAEQRGDNSKVSPELGKTAFDIENTSKMDSADNGAVDFCNQALGSYGKSLDYINNSPLETVQAIGNSLQLFREDKTKESCK
t454_GJGVOYN01BVNEF	t454_03865640	F051213	LLWAVVMALTFVLTSCDPFSKNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
t454_GJGVOYN01C0G2I	t454_06608590	F051213	SKLLWAVVMALTFVLTSCDPFSKNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK
t454_GJGVOYN01C9DRZ	t454_02368440	F094007	LLDRTERALLYVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGGIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLNYKKVRTAISLTKAGKKRSGWNKGCIDNNA
t454_GJGVOYN01CB9W4	t454_04364770	F105376	TTQDKEVISKRVWRRWGRDVIHIKESVDRHTITLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK
t454_GJGVOYN01CBAVO	t454_05016840	F032313	DNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGIDINLVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNNMQSNFC
t454_GJGVOYN01EDBLH	t454_05761730	F089055	MSSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAFDVANIPNNEAVYLCNQTLGSYGKSLDRINKNPLEVVQTIGTSLQHLRDEYKTEESCR