Scaffold sp300_12705224

Overview

Basic Information

• Taxon OID: 2124908012
• Scaffold ID: sp300_12705224
• Source Dataset Name: Human Subgingival plaque microbiome from visit number 1 of subject 763496533
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Los Alamos National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16675
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Subgingival Plaque → Subgingival Plaque Microbial Communities From Los Alamos National Laboratory, Usa

Source Dataset Sampling Location

• Location Name: St. Louis, MO, USA
• Coordinates
  • Lat. (^o): 38.646
  • Long. (^o): -90.224

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103434	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
sp300_00554070	F103434	AGGTGG	MVGFRPRRGRYLENGPHVVEVTLAIVKEGRTGRRYERGETFTVDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRVWPGGPHSWVKVIKGPDSLVGKTFQQAGEALTYDASPMTKHFSVRCDTLGTTAR