NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold sp300_12705224

Scaffold sp300_12705224


Overview

Basic Information
Taxon OID2124908012 Open in IMG/M
Scaffold IDsp300_12705224 Open in IMG/M
Source Dataset NameHuman Subgingival plaque microbiome from visit number 1 of subject 763496533
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLos Alamos National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16675
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Subgingival Plaque → Subgingival Plaque Microbial Communities From Los Alamos National Laboratory, Usa

Source Dataset Sampling Location
Location NameSt. Louis, MO, USA
CoordinatesLat. (o)38.646Long. (o)-90.224Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103434Metagenome101N

Sequences

Protein IDFamilyRBSSequence
sp300_00554070F103434AGGTGGMVGFRPRRGRYLENGPHVVEVTLAIVKEGRTGRRYERGETFTVDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRVWPGGPHSWVKVIKGPDSLVGKTFQQAGEALTYDASPMTKHFSVRCDTLGTTAR

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