NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold PBDC3_FUFP4423_b7

Scaffold PBDC3_FUFP4423_b7


Overview

Basic Information
Taxon OID2124908004 Open in IMG/M
Scaffold IDPBDC3_FUFP4423_b7 Open in IMG/M
Source Dataset NamePoplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)661
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Wood → Composting → Bioreactor → Poplar Biomass Bioreactor → Poplar Biomass Bioreactor Microbial Communities From Brookhaven National Lab, Ny

Source Dataset Sampling Location
Location NameUpton, NY
CoordinatesLat. (o)40.869444Long. (o)-72.886667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063615Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
PBDC3_08639750F063615N/AMVLAFLMMRFLISMTRGWMMAVGITLPKPEQEKAVALIWVAAFVVMALIVVGVGWAVLSSMSGSVNYR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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