Metagenome / Metatranscriptome Family F063615

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063615
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	62 residues
Representative Sequence	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLTSFSNSP
Number of Associated Samples	93
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	32.56 %
% of genes near scaffold ends (potentially truncated)	26.36 %
% of genes from short scaffolds (< 2000 bps)	72.87 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.992 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (14.729 % of family members)
Environment Ontology (ENVO)	Unclassified (38.760 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.318 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.41% β-sheet: 0.00% Coil/Unstructured: 46.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF02423	OCD_Mu_crystall	59.69
PF00692	dUTPase	5.43
PF01740	STAS	1.55
PF00589	Phage_integrase	0.78
PF05726	Pirin_C	0.78
PF13458	Peripla_BP_6	0.78
PF02310	B12-binding	0.78
PF02525	Flavodoxin_2	0.78
PF00691	OmpA	0.78
PF13358	DDE_3	0.78
PF13801	Metal_resist	0.78
PF07228	SpoIIE	0.78
PF02678	Pirin	0.78
PF12704	MacB_PCD	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	59.69
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	5.43
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	5.43
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	1.55

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.99 %
Unclassified	root	N/A	31.01 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.99 %
Unclassified	root	N/A	31.01 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.99 %
Unclassified	root	N/A	31.01 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.11 %
Unclassified	root	N/A	31.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.01 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	16.28 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.20 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.01 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	16.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.20 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.01 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.20 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.20 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.33 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1.55 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.20 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.33 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1.55 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908004\|PBDC3_FUFP4423_b7	Not Available	661	Open in IMG/M
3300000733\|JGI12408J11912_1011535	Not Available	671	Open in IMG/M
3300003218\|JGI26339J46600_10049450	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1129	Open in IMG/M
3300003219\|JGI26341J46601_10005215	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4264	Open in IMG/M
3300003351\|JGI26346J50198_1019220	Not Available	667	Open in IMG/M
3300003368\|JGI26340J50214_10015397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2387	Open in IMG/M
3300003369\|JGI24140J50213_10230498	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300004080\|Ga0062385_11057936	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300004091\|Ga0062387_100640169	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300004091\|Ga0062387_101526944	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	536	Open in IMG/M
3300004152\|Ga0062386_100151240	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300004152\|Ga0062386_100217813	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1505	Open in IMG/M
3300004152\|Ga0062386_101549056	Not Available	553	Open in IMG/M
3300004633\|Ga0066395_10002740	All Organisms → cellular organisms → Bacteria	6090	Open in IMG/M
3300005921\|Ga0070766_10000214	All Organisms → cellular organisms → Bacteria	24087	Open in IMG/M
3300005994\|Ga0066789_10171753	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	917	Open in IMG/M
3300005995\|Ga0066790_10152210	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300006052\|Ga0075029_100172120	All Organisms → cellular organisms → Bacteria	1341	Open in IMG/M
3300006052\|Ga0075029_101177621	Not Available	534	Open in IMG/M
3300006052\|Ga0075029_101220328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	526	Open in IMG/M
3300006055\|Ga0097691_1000343	All Organisms → cellular organisms → Bacteria	42240	Open in IMG/M
3300006055\|Ga0097691_1028679	All Organisms → cellular organisms → Bacteria → Acidobacteria	2235	Open in IMG/M
3300006055\|Ga0097691_1039148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1757	Open in IMG/M
3300006059\|Ga0075017_100430839	All Organisms → cellular organisms → Bacteria → Acidobacteria	993	Open in IMG/M
3300006059\|Ga0075017_101146693	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300006642\|Ga0075521_10185223	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300006642\|Ga0075521_10252135	Not Available	844	Open in IMG/M
3300006642\|Ga0075521_10654295	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300009826\|Ga0123355_10595452	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300010046\|Ga0126384_10020400	All Organisms → cellular organisms → Bacteria	4274	Open in IMG/M
3300010048\|Ga0126373_10031600	All Organisms → cellular organisms → Bacteria	4584	Open in IMG/M
3300010048\|Ga0126373_10179363	All Organisms → cellular organisms → Bacteria	2037	Open in IMG/M
3300010048\|Ga0126373_10496797	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300010339\|Ga0074046_10003371	All Organisms → cellular organisms → Bacteria	13399	Open in IMG/M
3300010341\|Ga0074045_10384968	Not Available	911	Open in IMG/M
3300010361\|Ga0126378_12585487	Not Available	580	Open in IMG/M
3300010376\|Ga0126381_100265471	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300010376\|Ga0126381_100803557	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300010376\|Ga0126381_101121100	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1137	Open in IMG/M
3300010376\|Ga0126381_103057511	Not Available	664	Open in IMG/M
3300010376\|Ga0126381_104068134	Not Available	568	Open in IMG/M
3300010379\|Ga0136449_100155026	All Organisms → cellular organisms → Bacteria → Acidobacteria	4481	Open in IMG/M
3300010379\|Ga0136449_101183287	Not Available	1206	Open in IMG/M
3300010398\|Ga0126383_11353630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300015371\|Ga0132258_11366733	All Organisms → cellular organisms → Bacteria	1789	Open in IMG/M
3300016294\|Ga0182041_12036821	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300016371\|Ga0182034_11904502	Not Available	525	Open in IMG/M
3300016387\|Ga0182040_10304239	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300021171\|Ga0210405_11064888	Not Available	606	Open in IMG/M
3300021407\|Ga0210383_10315196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1346	Open in IMG/M
3300021478\|Ga0210402_10764317	Not Available	891	Open in IMG/M
3300021560\|Ga0126371_10009904	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8586	Open in IMG/M
3300021560\|Ga0126371_10358430	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300021560\|Ga0126371_11485929	Not Available	806	Open in IMG/M
3300021560\|Ga0126371_11607364	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300025427\|Ga0208077_1000967	All Organisms → cellular organisms → Bacteria	3825	Open in IMG/M
3300025474\|Ga0208479_1034784	Not Available	1035	Open in IMG/M
3300025579\|Ga0207927_1005198	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4875	Open in IMG/M
3300025619\|Ga0207926_1000169	All Organisms → cellular organisms → Bacteria	34173	Open in IMG/M
3300025619\|Ga0207926_1083165	Not Available	807	Open in IMG/M
3300026291\|Ga0209890_10138114	Not Available	818	Open in IMG/M
3300026294\|Ga0209839_10163340	Not Available	729	Open in IMG/M
3300026833\|Ga0207728_105323	Not Available	1283	Open in IMG/M
3300026839\|Ga0207764_109491	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300026845\|Ga0207760_109343	Not Available	819	Open in IMG/M
3300026849\|Ga0207804_110488	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300026854\|Ga0207727_112966	All Organisms → cellular organisms → Bacteria → Acidobacteria	787	Open in IMG/M
3300026869\|Ga0207821_1021679	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300026876\|Ga0207837_1007556	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300026979\|Ga0207817_1011810	Not Available	986	Open in IMG/M
3300026981\|Ga0207822_1018003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300027003\|Ga0207722_1014877	Not Available	877	Open in IMG/M
3300027010\|Ga0207839_1031447	Not Available	602	Open in IMG/M
3300027698\|Ga0209446_1028671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1394	Open in IMG/M
3300027703\|Ga0207862_1046794	Not Available	1304	Open in IMG/M
3300027783\|Ga0209448_10000944	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9084	Open in IMG/M
3300027812\|Ga0209656_10017771	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4385	Open in IMG/M
3300027812\|Ga0209656_10034741	All Organisms → cellular organisms → Bacteria → Acidobacteria	2958	Open in IMG/M
3300027812\|Ga0209656_10057143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2175	Open in IMG/M
3300027812\|Ga0209656_10130399	Not Available	1284	Open in IMG/M
3300027812\|Ga0209656_10160923	Not Available	1117	Open in IMG/M
3300027812\|Ga0209656_10505151	Not Available	528	Open in IMG/M
3300027825\|Ga0209039_10012735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4684	Open in IMG/M
3300027889\|Ga0209380_10008841	All Organisms → cellular organisms → Bacteria	5934	Open in IMG/M
3300027894\|Ga0209068_10566651	Not Available	659	Open in IMG/M
3300028646\|Ga0302159_10006225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2682	Open in IMG/M
3300028740\|Ga0302294_10143003	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300029989\|Ga0311365_10573470	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300030001\|Ga0302272_1131656	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300030047\|Ga0302286_10056416	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M
3300030114\|Ga0311333_10031754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3693	Open in IMG/M
3300030114\|Ga0311333_10096285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2198	Open in IMG/M
3300030969\|Ga0075394_11110125	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300031057\|Ga0170834_103344840	Not Available	688	Open in IMG/M
3300031231\|Ga0170824_100427848	Not Available	688	Open in IMG/M
3300031231\|Ga0170824_112497302	Not Available	689	Open in IMG/M
3300031680\|Ga0318574_10358759	All Organisms → cellular organisms → Bacteria → Acidobacteria	850	Open in IMG/M
3300031681\|Ga0318572_10105562	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1594	Open in IMG/M
3300031682\|Ga0318560_10786729	Not Available	514	Open in IMG/M
3300031719\|Ga0306917_10361898	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300031747\|Ga0318502_10620148	Not Available	652	Open in IMG/M
3300031768\|Ga0318509_10190929	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300031821\|Ga0318567_10613876	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300031879\|Ga0306919_10339131	Not Available	1147	Open in IMG/M
3300031879\|Ga0306919_10565697	All Organisms → cellular organisms → Bacteria → Acidobacteria	877	Open in IMG/M
3300031879\|Ga0306919_11077720	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300031890\|Ga0306925_10057605	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4064	Open in IMG/M
3300031890\|Ga0306925_10179566	All Organisms → cellular organisms → Bacteria	2280	Open in IMG/M
3300031912\|Ga0306921_10162239	All Organisms → cellular organisms → Bacteria	2616	Open in IMG/M
3300031942\|Ga0310916_10115339	All Organisms → cellular organisms → Bacteria	2178	Open in IMG/M
3300031942\|Ga0310916_10413676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1148	Open in IMG/M
3300031945\|Ga0310913_10850585	Not Available	642	Open in IMG/M
3300031947\|Ga0310909_10070812	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2739	Open in IMG/M
3300031947\|Ga0310909_10194410	All Organisms → cellular organisms → Bacteria → Acidobacteria	1684	Open in IMG/M
3300032001\|Ga0306922_11206150	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300032059\|Ga0318533_10217763	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300032160\|Ga0311301_10260957	Not Available	2839	Open in IMG/M
3300032205\|Ga0307472_100297567	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1295	Open in IMG/M
3300032261\|Ga0306920_100434171	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300032261\|Ga0306920_101997593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300032770\|Ga0335085_10043724	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6116	Open in IMG/M
3300032782\|Ga0335082_11716632	Not Available	502	Open in IMG/M
3300032828\|Ga0335080_10851006	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300032829\|Ga0335070_10025884	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6733	Open in IMG/M
3300032829\|Ga0335070_10044160	All Organisms → cellular organisms → Bacteria	4951	Open in IMG/M
3300032829\|Ga0335070_10804160	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300032892\|Ga0335081_10609494	Not Available	1345	Open in IMG/M
3300032893\|Ga0335069_11698057	Not Available	673	Open in IMG/M
3300032897\|Ga0335071_10193456	All Organisms → cellular organisms → Bacteria → Acidobacteria	1987	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.67%
Host-Associated	Host-Associated	1.55%
Engineered	Engineered	0.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.29%
Aquatic	Environmental → Aquatic	19.38%
Arthropoda	Host-Associated → Arthropoda	0.78%
Plants	Host-Associated → Plants	0.78%
Solid Waste	Engineered → Solid Waste	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.87%
Freshwater	Environmental → Aquatic → Freshwater	14.73%
Peat	Environmental → Terrestrial → Peat	5.43%
Sediment	Environmental → Aquatic → Sediment	4.65%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.78%
Wood	Engineered → Solid Waste → Wood	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.73%
Loam	Environmental → Terrestrial → Soil → Loam	12.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.65%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.78%
Composting	Engineered → Solid Waste → Wood → Composting	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.40%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	9.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.10%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.78%
Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor	0.78%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	14.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.08%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	9.30%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.65%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	3.10%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.33%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.55%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.78%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.78%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Poplar Biomass Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor → Poplar Biomass Bioreactor	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908004	Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community	Engineered	Open in IMG/M
3300000733	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300026839	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes)	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300026849	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)	Environmental	Open in IMG/M
3300026854	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)	Environmental	Open in IMG/M
3300026869	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 (SPAdes)	Environmental	Open in IMG/M
3300026876	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_2	Environmental	Open in IMG/M
3300028740	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030001	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_2	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
PBDC3_08639750	2124908004	Poplar Biomass Bioreactor	MVLAFLMMRFLISMTRGWMMAVGITLPKPEQEKAVALIWVAAFVVMALIVVGVGWAVLSSMSGSVNYR
JGI12408J11912_10115352	3300000733	Tropical Forest Soil	MLMQFLVKFTRGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLASISRSMN*
JGI26339J46600_100494501	3300003218	Bog Forest Soil	MLMRLLVSFTKGIMMAIGITLPTPEQEKAVAIIWVVAFFAMIGIILGVGWLVLTSFSTAGH*
JGI26341J46601_100052154	3300003219	Bog Forest Soil	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVALFAMIGIVLGVGWVVLTSFSSGAR*
JGI26346J50198_10192201	3300003351	Bog Forest Soil	MFMRLLVSFTRGIMLAIGITLPKPEQEKTVAIVWVVAFFAMIGIVLGVGWIVLTSFSSGAR*
JGI26340J50214_100153972	3300003368	Bog Forest Soil	MIMRFLVSFTKGIMMAIGITLPTPEQEKAVALVWVVAFFAMIGIVLGVGWLVLTSFATAGH*
JGI24140J50213_102304982	3300003369	Arctic Peat Soil	MLMRYLVSFTRGIMLAVGITLPKPEQEKAVALIWVAAFFVMIAIIFGAGWAVLESISRSMN*
Ga0062385_110579362	3300004080	Bog Forest Soil	MIMRFLVSFTKGLMLAIGITLPTPEQEKTVAIVWVVAFFVMIAILFAAGWAVLTSISHSMN*
Ga0062387_1006401691	3300004091	Bog Forest Soil	MIMRMLVSFTKGIMLAIGITLPKPEQEKTVAIIWVAAFFVMIGIIFGVGWAVLASFSSG
Ga0062387_1015269442	3300004091	Bog Forest Soil	MIMRFLVSFTKGIMLAIGITLPTPEQEKAVAIIWVVAFFVMIGIILGVGWAVLTSFANAGH*
Ga0062386_1001512404	3300004152	Bog Forest Soil	MLMRFLVSFTRGIMLAVGITLPKPEQEKAVALIWVAAFFVMIAIIFGAGWAVLASISRSMN*
Ga0062386_1002178132	3300004152	Bog Forest Soil	MPTSMLMRFLVSVSKGIMFAVGITPPKPEHEKAVALIWVAAFFVMIAIIAGVGWAVLQSISHSMN*
Ga0062386_1015490561	3300004152	Bog Forest Soil	MLMRFLVSFTKGIMLAIGITLPTPEQEKTVAIVWVVAFFVMIAILFGAGWAVLTSISHSMN*
Ga0066395_100027407	3300004633	Tropical Forest Soil	MIMRFLVSLSKGIMLAIGITLPQPEHEKAVALIWVAAFFAMLAIILGVGWAVLMSISHTMN*
Ga0070766_1000021427	3300005921	Soil	MFMRFLVSFTKGIMLAIGITLPTPEQEKAVAIIWVVAFFLMIGIILCVGWAVLTSFATVGH*
Ga0066789_101717532	3300005994	Soil	MLMRFLVSCTKGLMLAIGITLPTPEQEKTVAIVWVVAFFVIIAIIAGAGWAVLTSISHSMN*
Ga0066790_101522101	3300005995	Soil	ENGDNSFSRSRFGPRNPTMLMRFLVSCTKGLMLAIGITLPTPEQEKTVAIVWVVAFFVIIAIIAGAGWAVLTSISHSMN*
Ga0075029_1001721202	3300006052	Watersheds	MLMRFLVSFTRGIMLAIGITLPTPEQEKAVALIWVAVFFIMIAIIFGAGWAVLTSISHSMN*
Ga0075029_1011776212	3300006052	Watersheds	MRYLVSFTRGIMLAVGITLPKPEQEKAVALIWVAAFFVMIAIIFGAGWAVLESISRSMN*
Ga0075029_1012203282	3300006052	Watersheds	MIMRFLVSFTKGIMLAIGITLPTPEQEKAVAIIWVVAFFVMVAIILGVGWAVLTSFANAGH*
Ga0097691_10003436	3300006055	Arctic Peat Soil	LPALLSNAMIMRMLVSFTKGIMLAIGITLPTPEQEKAVAVIWVVAFFVMVGIILGVGWVVLTSFSTSAR*
Ga0097691_10286794	3300006055	Arctic Peat Soil	MIMRMLVSFTKGIMLAIGITLPTPEQEKAVAIIWVGAFFAMIAIILGVGWAVLTSFSSGAH*
Ga0097691_10391482	3300006055	Arctic Peat Soil	MLMRMLVSFTKGIMLAIGITLPTPEQEKTVAIVWVVAFFAMIAIISGVGWAVLTSFSTAGH*
Ga0075017_1004308392	3300006059	Watersheds	MLMRFLVSFTKAIMLAIGITLPKPEQEKAVALIWVAAFFVMIAIIVGAGWAVLESISHAQN*
Ga0075017_1011466932	3300006059	Watersheds	MLMRFLVSFTKAIMLAIGITLPKPEQEKAVALIWVAAFFVMIAIIVGAGWAVLESISRAQN*
Ga0075521_101852232	3300006642	Arctic Peat Soil	MIMRMLVSFTKGIMLAIGITLPTPEQEKAVAIIWVAAFFVMIAIILGVGWAVLTSFSTATH*
Ga0075521_102521352	3300006642	Arctic Peat Soil	MIMRMLVSFTKGIMLAIGITLPTPEQEKAVAIIWLAAFFVMIAIILGVGWAVLTSFSTATR*
Ga0075521_106542952	3300006642	Arctic Peat Soil	MRFLISLTKGIMLAIGITLPTPEQEKTVALVWVAAFFVMIAILFGAGWAVLTSISHSMN*
Ga0123355_105954522	3300009826	Termite Gut	MLMRLLISFTKGIMLAIGITLPKPEQEKTVALVWVVAFFVMIGIVAGVGWLVLTSFSNSPK*
Ga0126384_100204001	3300010046	Tropical Forest Soil	MLMRLLISFSKGIMLAIGITLPKPEQEKTVALVWVAAFFLMIAIIVGVGWAVLASLSHSMN*
Ga0126373_100316002	3300010048	Tropical Forest Soil	MLMRLLVSCTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSPQ*
Ga0126373_101793632	3300010048	Tropical Forest Soil	LVLAAIPTAMLMRLLISFTREIMIAIGITLPKPEQEKTVAIVWVGAFFVMIGIIAGVGWLVLKSFSNSPQ*
Ga0126373_104967972	3300010048	Tropical Forest Soil	MLMRLLISFTKGIMIAIGITLPKPEHEKTVAIVWVVAFFAMIAIIAGVGWLVLKSFSNSPQ*
Ga0074046_1000337110	3300010339	Bog Forest Soil	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVAFFAMIGIVLGVGWVVLTSFSSGGR*
Ga0074045_103849682	3300010341	Bog Forest Soil	MFMRYLVSFTKGIMLAIGITLPKPEQEKAVAIIWVVAFFAMIGIIAAVGWAVLTSLSRSMN*
Ga0126378_125854872	3300010361	Tropical Forest Soil	MLMRFLISLTKGIMLAIGITLPKPEQEKAVALVWVVAFFVMIGIIAVVGWLVLTSFSNGPQ*
Ga0126381_1002654714	3300010376	Tropical Forest Soil	MLMRLLVSFTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSPQ*
Ga0126381_1008035571	3300010376	Tropical Forest Soil	MLMRLLVSCTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSP
Ga0126381_1011211002	3300010376	Tropical Forest Soil	MLMRLLISFTKGIMMAIGITLPKPEQEKAVAMVWVVAFFVMIGIIAVVGWLVLQSFSNSAQ*
Ga0126381_1030575111	3300010376	Tropical Forest Soil	MLMRLLVSFTKGIMIAIGITLPKPEQEKTVAIVWVMAFFVMIGIIVGVG
Ga0126381_1040681341	3300010376	Tropical Forest Soil	MLMRLLISFTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKS
Ga0136449_1001550263	3300010379	Peatlands Soil	MALHCHWTFCRPPADMLMRWLIWLTRGIMLAIGITLPKPEQEKTVAIVWVVAFFAMIGIVLGVGWVVLTSFSNGAR*
Ga0136449_1011832872	3300010379	Peatlands Soil	MFMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVAFFVMIGIIWGVGWAVLTSFSNGAR*
Ga0126383_113536302	3300010398	Tropical Forest Soil	MLMRLLVSFTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIILGVGWLVLKSFS
Ga0132258_113667331	3300015371	Arabidopsis Rhizosphere	MIMRFLVWLTKGIMLAIGITLPTPEQEKTVALVWVAAFFVMIGIIFGVGWAVLVSFGDGQH*
Ga0182041_120368212	3300016294	Soil	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIAWVLAFFAMIGIIAVVGWLVLTSFSNGP
Ga0182034_119045022	3300016371	Soil	MLMRLLVSSTKGIMIAIGITLPKPEQEKTLAIVWVVAFFVMIGIIAGVAWLVLKSFSNSP
Ga0182040_103042391	3300016387	Soil	TWFLPRFPTAMLMRLLISFTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSPQ
Ga0210405_110648881	3300021171	Soil	MIMRFLVSLTKGIMMAIGITLPKPDQEKAVAIIWVAAFFVMIGIILGVGWIVLTSFSNGA
Ga0210383_103151962	3300021407	Soil	MLMRFLISFTKGIMMAIGITLPTPEQEKTVALVWVAAFFVMIAIILGVGWAVLTSFAGGA
Ga0210402_107643172	3300021478	Soil	MIMRFLVSFTKGIMLAIGITLPTPEQEKAVAIVWVVAFFVMIGIILGVGWAVLTSFATAG
Ga0126371_100099048	3300021560	Tropical Forest Soil	MIMRFLVSLSKGIMLAIGITLPQPEHEKAVALIWVAAFFAMLAIILGVGWAVLMSISHTM
Ga0126371_103584302	3300021560	Tropical Forest Soil	LVLAAIPTAMLMRLLISFTREIMIAIGITLPKPEQEKTVAIVWVGAFFVMIGIIAGVGWLVLKSFSNSPQ
Ga0126371_114859292	3300021560	Tropical Forest Soil	MNFLVKLTRGIMLAIGITLPKPEHEKAVALVWVAAFFLMATIILGSGWAVLQSFSRAMN
Ga0126371_116073641	3300021560	Tropical Forest Soil	IMRFLVSLSKGIMLAIGITLPQPEHEKAVALIWVAAFFAMLGIILGVGWAVLTSISHTMN
Ga0208077_10009673	3300025427	Arctic Peat Soil	MLMRYLVSFTRGIMLAVGITLPKPEQEKAVALIWVAAFFVMIAIIFGAGWAVLESISRSM
Ga0208479_10347842	3300025474	Arctic Peat Soil	MIMRMLVSFTKGIMLAIGITLPTPEQEKAVAIIWVAAFFVMIAIILGVGWAVLTSFSTAT
Ga0207927_10051984	3300025579	Arctic Peat Soil	MIMRMLVSFTKGIMLAIGITLPTPEQEKAVAIIWVGAFFAMIAIILGVGWAVLTSFSSGA
Ga0207926_10001696	3300025619	Arctic Peat Soil	LPALLSNAMIMRMLVSFTKGIMLAIGITLPTPEQEKAVAVIWVVAFFVMVGIILGVGWVVLTSFSTSAR
Ga0207926_10831652	3300025619	Arctic Peat Soil	MLMRMLVSFTKGIMLAIGITLPTPEQEKTVAIVWVVAFFAMIAIILGVGWAVLT
Ga0209890_101381141	3300026291	Soil	DGASAGRYLLNFMIMRILVSFTKGIMLAIGITLPTPEQEKAVAIIWVAAFFAMIAIILGVGWAVLTSFSTATH
Ga0209839_101633401	3300026294	Soil	ENGDNSFSRSRFGPRNPTMLMRFLVSCTKGLMLAIGITLPTPEQEKTVAIVWVVAFFVIIAIIAGAGWAVLTSISHSMN
Ga0207728_1053231	3300026833	Tropical Forest Soil	MLMRFLVSFTKGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLASISRSM
Ga0207764_1094912	3300026839	Tropical Forest Soil	MLMQFLVKFTRGIMLAIGITLPKPEQEKAVALIWVAAFFLMVAIIFGAGWAVLASISRSM
Ga0207760_1093432	3300026845	Tropical Forest Soil	LMQFLVKFTRGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLASISRSMN
Ga0207804_1104882	3300026849	Tropical Forest Soil	LGPLAMLMRFLVSFTKGIMLAIGITLPKPEQEKAVALIWVAAFFLMVAIIFGAGWAVLASISRSMN
Ga0207727_1129662	3300026854	Tropical Forest Soil	MLMRYLVSLTRGIMLAIGITLPKPEQEKTVALVWVAAFFVMIAIIFAAGWAVLASISRSM
Ga0207821_10216792	3300026869	Tropical Forest Soil	MQFLVKFTRGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLASISRSMN
Ga0207837_10075562	3300026876	Tropical Forest Soil	MLMQFLVKFTRGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAV
Ga0207817_10118102	3300026979	Tropical Forest Soil	LGPLAMLMRFLVSFTKGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLASISRSMN
Ga0207822_10180032	3300026981	Tropical Forest Soil	MLMRFLVSFTKGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLESISRSM
Ga0207722_10148771	3300027003	Tropical Forest Soil	LGPLAMLMRFLVSFTKGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLESISRSMN
Ga0207839_10314471	3300027010	Tropical Forest Soil	MLMQFLVKFTRGIMLAIGITLPKPEQEKAVALIWVAAFFLMIAIIFGAGWAVLASI
Ga0209446_10286712	3300027698	Bog Forest Soil	MIMRFLVSFTKGLMLAIGITLPTPEQEKTVAIVWVVAFFVMIAILFAAGWAVLTSISHSM
Ga0207862_10467941	3300027703	Tropical Forest Soil	MLMRYLVSLTRGIMLAIGITLPKPEQEKTVALVWVAAFFVMIAIIFAAGW
Ga0209448_100009443	3300027783	Bog Forest Soil	LADGKPRVRQLYATVMFMRLLVSFTRGIMLAIGITLPKPEQEKTVAIVWVVAFFAMIGIVLGVGWIVLTSFSSGAR
Ga0209656_100177712	3300027812	Bog Forest Soil	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVALFAMIGIVLGVGWVVLTSFSSGA
Ga0209656_100347412	3300027812	Bog Forest Soil	MIMRFLVSFTKGIMMAIGITLPTPEQEKAVALVWVVAFFAMIGIVLGVGWLVLTSFATAG
Ga0209656_100571433	3300027812	Bog Forest Soil	MLMRLLVSFTKGIMMAIGITLPSPEQEKAVAIIWVVAFFAMIGIILGVGWLVLTSFSTAG
Ga0209656_101303992	3300027812	Bog Forest Soil	MRFLVSFTRGIMLAVGITLPKPEQEKAVALIWVAAFFVMIAIIFGAGWAVLASISRSMN
Ga0209656_101609232	3300027812	Bog Forest Soil	MPTSMLMRFLVSVSKGIMFAVGITPPKPEHEKAVALIWVAAFFVMIAIIAGVGWAVLQSISHSMN
Ga0209656_105051512	3300027812	Bog Forest Soil	LVSFTKGIMLAIGITLPTPEQEKAVAIIWVVAFFVMIGIILGVGWAVLTSFGNAGH
Ga0209039_100127357	3300027825	Bog Forest Soil	MLMRLLVSFTKGIMMAIGITLPTPEQEKAVAIIWVVAFFAMIGIILGVGWLVLTSFSTAG
Ga0209380_100088416	3300027889	Soil	MFMRFLVSFTKGIMLAIGITLPTPEQEKAVAIIWVVAFFLMIGIILCVGWAVLTSFATVG
Ga0209068_105666512	3300027894	Watersheds	MLMRFLVSFTKAIMLAIGITLPKPEQEKAVALIWVAAFFVMIAIIVGAGWAVLESISHAQ
Ga0302159_100062252	3300028646	Fen	MLMRFLISLTKGIMLAIGITLPTPEQERAVALVWVVAFFVMIGILFGAGWAVLTSISHSM
Ga0302294_101430032	3300028740	Fen	HSDMIMRMLVSLTKGIMLAIGITLPTPEQEKAVAIIWVAAFFGMIGIIFGVGWAVLTSFSSAAR
Ga0311365_105734701	3300029989	Fen	SFTKAIMLAIGITLPKPEQEKAVALIWVAAFFVMIAIIVGAGWAVLESISRAQN
Ga0302272_11316562	3300030001	Bog	MIMRMLVSLTKGIMLAIGITLPTPEQEKAVAIIWVAAFCGMIGIIFGVGWAVLTSFSSAA
Ga0302286_100564162	3300030047	Fen	MIMRMLVSLTKGIMLAIGITLPTPEQEKAVAIIWVAAFFGMIAIIFGVGWAVLTSFSSAA
Ga0311333_100317542	3300030114	Fen	MLMRFLVSFTKAIMLAIGITLPKPEQEKAVALIWVAAFFVMIAIIVGAGWAVLESISRAQ
Ga0311333_100962852	3300030114	Fen	MIMRMLVSLTKGIMLAIGITLPTPEQEKAVAIIWVAAFFGMIGIIFGVGWAVLTSFSSAA
Ga0075394_111101251	3300030969	Soil	GSMRFLVSLTKGVMLAIGITLPKPEHENAVALIWVAAFFAMIAIIAAVGWAVLNSMSQSM
Ga0170834_1033448401	3300031057	Forest Soil	MIMRLLVSFTKGIMLAVGITLPTPEQEKTVALVWVAAFVAMIGIILGVGWLVLTSFSTAA
Ga0170824_1004278481	3300031231	Forest Soil	MIMRLLVSFTKGIMLAVGITLPTPEQEKTVALVWVAAVVAMSGIILGVGWLVLTSFSTAA
Ga0170824_1124973021	3300031231	Forest Soil	MLMRFLVSFTKGIMLAIGITLPTPEQEKAVALVWVAAFFAMIAILFGAGWAVLSSISHSM
Ga0318574_103587592	3300031680	Soil	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLTSFSNSP
Ga0318572_101055622	3300031681	Soil	MLMRFLVSISKGIMFAVGITPPKPEHEKAVALIWVAAFFVMVGIIAGVGWFVLQSISHSM
Ga0318560_107867292	3300031682	Soil	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVAFFVMIGIIATVGWLVLTSFSNSP
Ga0306917_103618982	3300031719	Soil	MTQCVLDLLSPGIPNDMLMRLLISFTKGIMLAIGITLPKPEQEKTVALVWVVAFFVMIGIVAGVGWLVLTSFSNSPK
Ga0318502_106201482	3300031747	Soil	MYATWFLPRFPTAMLMRLLISFTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSPQ
Ga0318509_101909291	3300031768	Soil	FLPRFPTAMLMRLLISFTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSPQ
Ga0318567_106138761	3300031821	Soil	MLMRFLVSISKGIMFAVGITPPKPEHEKAVALIWVAAFFVMVGIIAGVGWFVLQ
Ga0306919_103391312	3300031879	Soil	MIMRFLVSLSKGIMLAIGITLPQPEHEKAVALIWVAAFFVMLAIILGVGWAVLTSISHSM
Ga0306919_105656971	3300031879	Soil	MLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVAFLVMIGIIATVGWLVLTSFSNSP
Ga0306919_110777202	3300031879	Soil	GGIRDSHPARIPNDMLMRLLVSSTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVAWLVLKSFSNSPQ
Ga0306925_100576053	3300031890	Soil	MIMRFLVALSKAIMLAVGITLPKPEHEKTVALIWVAAFFAMIAIILGVGWAVLNSLSHSM
Ga0306925_101795661	3300031890	Soil	PVATVMIMRILVSFTKGIMLAIGITLPTPEQEKAVAIIWVVAFFVMIGIILGVGWIVLTSFSTGPR
Ga0306921_101622391	3300031912	Soil	ILVSFTKGIMLAIGITLPTPEQEKAVAIIWVVAFFVMIGIILGVGWIVLTSFSTGPR
Ga0310916_101153392	3300031942	Soil	VIMTQCVLDLLSPGIPNDMLMRLLISFTKGIMLAIGITLPKPEQEKTVALVWVVAFFVMIGIVAGVGWLVLTSFSNSPK
Ga0310916_104136762	3300031942	Soil	MLMRFLVSLTKGIMLAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLTSFSNSP
Ga0310913_108505852	3300031945	Soil	AVIMTQCVLDLLSPGIPNDMLMRLLISFTKGIMLAIGITLPKPEQEKTVALVWVVAFFVMIGIVAGVGWLVLTSFSNSPK
Ga0310909_100708121	3300031947	Soil	NPMIMRFLVALSKAIMLAVGITLPKPEHEKTVALIWVAAFFAMIAIILGVGWAVLNSLSHSMN
Ga0310909_101944104	3300031947	Soil	IRDSHPARIPNDMLMRLLVSSTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSPQ
Ga0306922_112061502	3300032001	Soil	DMLMRLLVSSTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVAWLVLKSFSNSPQ
Ga0318533_102177632	3300032059	Soil	MLMRLLISFTKGIMIAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAGVGWLVLKSFSNSP
Ga0311301_102609573	3300032160	Peatlands Soil	MALHCHWTFCRPPADMLMRWLIWLTRGIMLAIGITLPKPEQEKTVAIVWVVAFFAMIGIVLGVGWVVLTSFSNGAR
Ga0307472_1002975672	3300032205	Hardwood Forest Soil	MLMRFLIRFTKGIMLAIGITLPTPEQEKAVAIVWVVTFFAMIAIILGVGWAVLASISHSM
Ga0306920_1004341714	3300032261	Soil	NDMLMRLLVSSTKGIMIAIGITLPKPEQEKTLAIVWVVAFFVMIGIIAGVAWLVLKSFSNSPQ
Ga0306920_1019975931	3300032261	Soil	MIMRFLVALSKAIMLAVGITLPKPEHEKTVALIWVAAFFAMIAIILGVGWAVLN
Ga0335085_100437248	3300032770	Soil	MLMRLLISFTKGIMLAIGITLPKPEQEKAVAIVWVAAFFAMIGIIAVVGWLVLTSFSNNA
Ga0335082_117166321	3300032782	Soil	LANSMLMRLLVSFTKGIMIAIGITLPTPEQEKAVAIIWVVAFFAMIAIILGVGWLVLTSFSTAVH
Ga0335080_108510061	3300032828	Soil	ARQCMPLASRRGSDPMLMRLLVSFTKGIMLAIGITLPKPEQEKTVAIVWVVAFFVMIGIIAVVGWLVLTSFSNSAQ
Ga0335070_100258848	3300032829	Soil	MIMRFLVRFTRGIMMAVGITLPKPEHEKAVALVWVAAFILMAAIILGSGWAVLQSISRAM
Ga0335070_100441604	3300032829	Soil	MRFLVSFTKGIMLAIGITLPKPEQEKAVALIWVAAFFVMIGIILGVGWAVLVSMSHNVN
Ga0335070_108041602	3300032829	Soil	MIMRFLVKFTRGIMMAVGITLPKPEHEKAVALVWVAAFFLMAAIILGSGWAVLQSISRAM
Ga0335081_106094942	3300032892	Soil	MLMRMLITFTKGIMLAIGITPPRPEQEKAVAIIWVVAFFVMMGIIVGVGWAVLVSFSHSM
Ga0335069_116980572	3300032893	Soil	VSFTRGIMLAIGITLPKPEHEKAVALIWVVAFFAMIAIILGVSWAVLESLSRTMN
Ga0335071_101934562	3300032897	Soil	MLMRFLVSFTRGIMLAIGITLPKPEHEKAVALIWVVAFFAMIAIILGVSWAVLESLSRTM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063615

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences