Scaffold BMHBC_34815

Overview

Basic Information

• Taxon OID: 2100351000
• Scaffold ID: BMHBC_34815
• Source Dataset Name: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1949
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Source Dataset Sampling Location

• Location Name: Lawrence Berkeley National Laboratory, California, USA
• Coordinates
  • Lat. (^o): 37.8754404
  • Long. (^o): -122.2477251

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087844	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
BMHBC_26655030	F087844	N/A	MKKTTLLFVTAFLLLFSLNTTSAQSRNIHFFGSYDRSLGNIIASVSPSLGSIEHDEISKLRNGSVNQFEVGAFINSFGLGIIHNFYSTDATTTYQNYDMNRDGLLDNGMLGDKLSLKFTGLEILYRKAILSSRFDVLWRIALGIQSYSLDKTTVISDNNPADSYQTLTGSVFTGLIGAGFDYHINKRLSVGIETSLLPGKYKKLKDKDSDYYTYEDNVSRLSTGLKLTLTL