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Sample 2100351000
2100351000: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 2
Overview
| Basic Information |
| IMG/M Taxon OID | 2100351000 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0046201 | Gp0051763 | Ga0026314 |
| Sample Name | Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 2 |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 1275044948 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information |
| Location | Lawrence Berkeley National Laboratory, California, USA |
| Coordinates | Lat. (o) | 37.8754404 | Long. (o) | -122.2477251 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F056624 | Metagenome | 137 | Y |
| F063258 | Metagenome / Metatranscriptome | 129 | Y |
| F087844 | Metagenome | 110 | N |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| BMHBC_163353 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 603 | Open in IMG/M |
| BMHBC_191214 | Not Available | 537 | Open in IMG/M |
| BMHBC_34815 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1949 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| BMHBC_163353 | BMHBC_23875650 | F063258 | MARANRFRVAMSAFVLLGVLEWVTLSPETVRVINGPNGMPLLDVSVRGVALAVLALFALRSWNHYRREMLEELERSGQE |
| BMHBC_191214 | BMHBC_07969920 | F056624 | MTAPSEQLHELTARCESCREETRDKLVAFDRRLLALEIVVRGEDGRNGIKSQLNSLCLRFDAFEKKAIRWIAVGTAFPGIVVAVLGILKFIGKL |
| BMHBC_34815 | BMHBC_26655030 | F087844 | MKKTTLLFVTAFLLLFSLNTTSAQSRNIHFFGSYDRSLGNIIASVSPSLGSIEHDEISKLRNGSVNQFEVGAFINSFGLGIIHNFYSTDATTTYQNYDMNRDGLLDNGMLGDKLSLKFTGLEILYRKAILSSRFDVLWRIALGIQSYSLDKTTVISDNNPADSYQTLTGSVFTGLIGAGFDYHINKRLSVGIETSLLPGKYKKLKDKDSDYYTYEDNVSRLSTGLKLTLTL |
