Scaffold BMHBC_191214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BMHBC_191214

Scaffold BMHBC_191214

Overview

Basic Information
Taxon OID	2100351000 Open in IMG/M
Scaffold ID	BMHBC_191214 Open in IMG/M
Source Dataset Name	Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 1 version 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	537
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Source Dataset Sampling Location
Location Name	Lawrence Berkeley National Laboratory, California, USA
Coordinates	Lat. (^o)	37.8754404	Long. (^o)	-122.2477251	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056624	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
BMHBC_07969920	F056624	N/A	MTAPSEQLHELTARCESCREETRDKLVAFDRRLLALEIVVRGEDGRNGIKSQLNSLCLRFDAFEKKAIRWIAVGTAFPGIVVAVLGILKFIGKL

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