Scaffold MXST_contig93023

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold MXST_contig93023

Scaffold MXST_contig93023

Overview

Basic Information
Taxon OID	2088090022 Open in IMG/M
Scaffold ID	MXST_contig93023 Open in IMG/M
Source Dataset Name	Sample MXST
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	National Research Council of Canada
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	521
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Midgut → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Source Dataset Sampling Location
Location Name	Fairbanks, Alaska
Coordinates	Lat. (^o)	64.880776	Long. (^o)	-147.869984	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y

Sequences

Protein ID	Family	RBS	Sequence
MXST_00635360	F006329	AGGAGG	MILELHVADVVDDHKIKMDAMRLKIRKIRKYAIHTEAWYHYAVGSIVTFVAVMIAFLVALKCFT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.