2088090022: Sample MXST

Overview

Basic Information

• IMG/M Taxon OID: 2088090022
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063147 | Gp0051951 | Ga0011057
• Sample Name: Sample MXST
• Sequencing Status: Permanent Draft
• Sequencing Center: National Research Council of Canada
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 86700198
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium WCE2008	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rumen Microbial Communities Of Musk Oxen From Alaska
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Midgut → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Fairbanks, Alaska
• Coordinates
  • Lat. (^o): 64.880776
  • Long. (^o): -147.869984
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y
F023770	Metagenome / Metatranscriptome	208	Y
F032501	Metagenome / Metatranscriptome	179	Y
F076635	Metagenome / Metatranscriptome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MXST_contig01563	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium WCE2008	7528
MXST_contig107740	Not Available	511
MXST_contig93023	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
MXST_contig01563	MXST_02151200	F076635	MIKRGTKVRVIKMDDAGGGFGWQAKQLNGRIFTVRYMDATKQIHLEETGIALIPGVDQYEIVKENE
MXST_contig107740	MXST_00734160	F023770	MAKVEFDPGIDSVHGILMGTDPFYIRRYPERGGGVMHIVQARPNRSGHVPSPAEAQARVTFGEIFGRQKHLDFQ
MXST_contig107740	MXST_00734170	F032501	MANENQERDWVKVLLEVMLKILTLGFYHIEKNRKDK
MXST_contig93023	MXST_00635360	F006329	MILELHVADVVDDHKIKMDAMRLKIRKIRKYAIHTEAWYHYAVGSIVTFVAVMIAFLVALKCFT