NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MXFT_Contig63124

Scaffold MXFT_Contig63124


Overview

Basic Information
Taxon OID2088090021 Open in IMG/M
Scaffold IDMXFT_Contig63124 Open in IMG/M
Source Dataset NameSample MXFT-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational Research Council of Canada
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Source Dataset Sampling Location
Location NameFairbanks, Alaska
CoordinatesLat. (o)64.880776Long. (o)-147.869984Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015816Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
MXFT_00117800F015816N/AFPNCGKSFLSQPALNNHKKTKHPELLEGQPKRGRGRPRKYPPKTIGDFESTKYDVFFNNPPRNAEEGKSIIVHNVVNQVFDFLYKGPNADKLFSHPHTWEENPILKNLNENAPVTDKPKQQRTCDEVFYEYLHNFKDKTNETYFTLLIKFVLLFRECYDISKNKDSKEEKKAVTDHMQPEGLPDLCNEFYGEFMDPNNFFGLDENDKNEIIRNNPTLLHLAIQE

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