2088090021: Sample MXFT-1

Overview

Basic Information

• IMG/M Taxon OID: 2088090021
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063147 | Gp0051950 | Ga0011056
• Sample Name: Sample MXFT-1
• Sequencing Status: Permanent Draft
• Sequencing Center: National Research Council of Canada
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75338853
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rumen Microbial Communities Of Musk Oxen From Alaska
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Fairbanks, Alaska
• Coordinates
  • Lat. (^o): 64.880776
  • Long. (^o): -147.869984
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014928	Metagenome / Metatranscriptome	259	Y
F015816	Metagenome / Metatranscriptome	252	Y
F037527	Metagenome / Metatranscriptome	167	Y
F045477	Metagenome / Metatranscriptome	152	N
F050059	Metagenome / Metatranscriptome	145	Y
F056234	Metagenome / Metatranscriptome	137	Y
F076635	Metagenome / Metatranscriptome	118	Y
F082003	Metagenome / Metatranscriptome	113	Y
F100168	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
MXFT_Contig170859	All Organisms → cellular organisms → Bacteria	980
MXFT_Contig26372	Not Available	600
MXFT_Contig3041	Not Available	703
MXFT_Contig35060	Not Available	782
MXFT_Contig63124	Not Available	828
MXFT_Contig6727	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2918
MXFT_Contig73257	Not Available	574

Sequences

Scaffold ID	Protein ID	Family	Sequence
MXFT_Contig170859	MXFT_01184980	F050059	LGKASMVNHRYFVPRDGQRAVAATAWKESARPCPHSRRGLTPLGRLQKYPKIHVSTGEESSGSGPDSTQGFWPRYRRERNPERPPSNSHGDWPFLSPPGRVPEVPVVTREHLPQLEKIQEVLPCRRDGAYFR
MXFT_Contig26372	MXFT_01243240	F014928	LEIQPVITTEVQPIIQKEITPVVHKQIQKIIHQEIQPVVIKRVQQIIHQEITPVVHREIQPIIQQEIQPVITKEIQPIIQREIIPVIHKEIQPVINQKIQPVITKEIQPIINRKIQPVIHKEIQPVIHENIQPVITTEIQPVITQKIQPVIHKEVQPVIHENIQPVITTEIQPVITQKSN
MXFT_Contig3041	MXFT_01373380	F056234	MSYKPFKVREERKQKPEEEPYKIPFIGKSTYNRHYPDWGTSEPQGDKVPPPEEIIVPLRGIPNYKESYPRYDDKYYTNGEPLNFTKPTLKFDGELDPRTTYNEAFKPTDLGNKHYFPD
MXFT_Contig35060	MXFT_01868530	F037527	MKILIKQNDMVKNHMKDFFKFINLEGKAYTELIERREELKAKYNAENQRVTAKKEKLYATGDVTKFELGTNEKGIDRERLMHDKPYAFEHICQNDTANLQKIYNQLGYANKMNMRELKKIIKEYCVRYVDNLKKFDEEFYPSINDLIGTWSNMQNFVMSANMPKMPAPAK
MXFT_Contig63124	MXFT_00117800	F015816	FPNCGKSFLSQPALNNHKKTKHPELLEGQPKRGRGRPRKYPPKTIGDFESTKYDVFFNNPPRNAEEGKSIIVHNVVNQVFDFLYKGPNADKLFSHPHTWEENPILKNLNENAPVTDKPKQQRTCDEVFYEYLHNFKDKTNETYFTLLIKFVLLFRECYDISKNKDSKEEKKAVTDHMQPEGLPDLCNEFYGEFMDPNNFFGLDENDKNEIIRNNPTLLHLAIQE
MXFT_Contig6727	MXFT_00583660	F076635	TKGLIMIKRGTKVRVIKMDDAGGGFGWQAKQLNGRIFTVRYMDATKQIHLEETGIALIPGVDQYEIVKENE
MXFT_Contig72473	MXFT_01703830	F082003	MRVGPFGQVRPDVGTFVQGPPMYGPYGGIGGARVDVDGDGIPDMRVGPFGQVNPDVGTFVKGPPMYGAGMYPPAYY
MXFT_Contig73257	MXFT_00720010	F100168	XPIPLCALPPTTSGLWGIVMCEMTLLCVSNPESPMKLLLIPYTVKAKIYPIILVLMFILVNYLEIDVEVISGVIYGFIYFYYLKTKLQISDTFVQKLETNNGFKWLSNFKGFISVTHISSGMPISITKVSSIDNEQEKLKGKGVVVAGSVYAKKEEENLENENEEVTVETTKIDSDVQN
MXFT_Contig88850	MXFT_01142710	F045477	TISEQGYSLDETDIIPFGFFKQLVNGMNYRILCAVKEKSSNTPTIYDINFHKSNSEMKMIYAKNPEDSGKKLSDKDKKKLETAIIKYYFEKLYKVKELDIQYEYHNFDGLNEYAVYDVIAELGNEKEKVSKRMLVIYRNDKTFTVETELIAKE