NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_17049720

Scaffold GPIPI_17049720


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_17049720 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1363
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090632Metagenome108Y
F097684Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
GPIPI_02382650F097684GAGGMSSVASAAVRENGSPLVKGRQPRKFTPENITRIKDWVAHGVGRDEIASRLEVTVGSLQVTCSRLGISLRKSSLANRKGAIQSLRGTQRSIEHIQQGDDPARVKVTMLIQKQNRLAQFDLPLNQCSIEQLALEASVRGQTVADLIGKIVRQVVEKDLSGKILRNGNSPSNV
GPIPI_02382660F090632N/AMGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALA
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