Metagenome Family F090632

Overview

Basic Information

• Family ID: F090632
• Family Type: Metagenome
• Number of Sequences: 108
• Average Sequence Length: 65 residues
• Representative Sequence: MAQREKLTFVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAQALATRTHLFRH
• Number of Associated Samples: 37
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 46.73 %
• % of genes near scaffold ends (potentially truncated): 27.78 %
• % of genes from short scaffolds (< 2000 bps): 88.89 %
• Associated GOLD sequencing projects: 30
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (73.148 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (31.482 % of family members)
• Environment Ontology (ENVO): Unclassified (49.074 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (55.556 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 19.10%
  β-sheet: 13.48%
  Coil/Unstructured: 67.42%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF12697	Abhydrolase_6	3.70
PF03401	TctC	0.93
PF01381	HTH_3	0.93
PF04392	ABC_sub_bind	0.93
PF00296	Bac_luciferase	0.93
PF07369	DUF1488	0.93
PF00593	TonB_dep_Rec	0.93
PF13751	DDE_Tnp_1_6	0.93
PF00872	Transposase_mut	0.93
PF00816	Histone_HNS	0.93
PF12244	DUF3606	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2916	DNA-binding protein H-NS	Transcription [K]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
All Organisms	root	All Organisms	26.85 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
cellular organisms	root	All Organisms → cellular organisms	26.85 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.85 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.30 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.85 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.63 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.56 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.85 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.56 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.56 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.15 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.56 %
Bradyrhizobium sp. G127	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2088090014|GPIPI_17049720	Not Available	1363
2228664022|INPgaii200_c0681978	Not Available	645
3300000364|INPhiseqgaiiFebDRAFT_100429845	Not Available	838
3300000580|AF_2010_repII_A01DRAFT_1046598	Not Available	668
3300000955|JGI1027J12803_101052457	Not Available	675
3300003911|JGI25405J52794_10010172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1786
3300003911|JGI25405J52794_10072064	Not Available	754
3300003911|JGI25405J52794_10116878	Not Available	600
3300005332|Ga0066388_101401099	Not Available	1214
3300005332|Ga0066388_101736097	All Organisms → cellular organisms → Bacteria	1106
3300005332|Ga0066388_102633233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	916
3300005332|Ga0066388_103150335	Not Available	843
3300005332|Ga0066388_103204546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	836
3300005332|Ga0066388_105159716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. G127	663
3300005332|Ga0066388_107516573	Not Available	547
3300005713|Ga0066905_100101572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1954
3300005713|Ga0066905_100176337	Not Available	1571
3300005713|Ga0066905_100427356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1082
3300005713|Ga0066905_100441075	Not Available	1068
3300005713|Ga0066905_100619753	Not Available	918
3300005713|Ga0066905_100622193	Not Available	917
3300005713|Ga0066905_100749194	Not Available	843
3300005713|Ga0066905_100834061	Not Available	802
3300005713|Ga0066905_100930282	Not Available	763
3300005713|Ga0066905_101264183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662
3300005713|Ga0066905_101264327	Not Available	662
3300005713|Ga0066905_101412725	Not Available	630
3300005713|Ga0066905_101551632	Not Available	604
3300005713|Ga0066905_101765862	Not Available	570
3300005764|Ga0066903_100539925	All Organisms → cellular organisms → Bacteria → Proteobacteria	1994
3300005764|Ga0066903_100702480	Not Available	1783
3300005764|Ga0066903_101163652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1428
3300005764|Ga0066903_101746537	Not Available	1186
3300005764|Ga0066903_102094396	All Organisms → cellular organisms → Bacteria	1089
3300005764|Ga0066903_102400383	Not Available	1020
3300005764|Ga0066903_102954692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	921
3300005764|Ga0066903_103342561	Not Available	866
3300005764|Ga0066903_104990899	All Organisms → cellular organisms → Bacteria	704
3300005764|Ga0066903_105052603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699
3300005764|Ga0066903_105174758	Not Available	690
3300005764|Ga0066903_106749508	Not Available	597
3300005937|Ga0081455_10018692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6582
3300005937|Ga0081455_10082027	All Organisms → cellular organisms → Bacteria	2639
3300005937|Ga0081455_10123741	Not Available	2034
3300005937|Ga0081455_10177679	Not Available	1615
3300005937|Ga0081455_10192492	Not Available	1534
3300005937|Ga0081455_10199846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1498
3300005937|Ga0081455_10676600	Not Available	661
3300005937|Ga0081455_10992500	Not Available	520
3300006038|Ga0075365_10130871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1736
3300006051|Ga0075364_10252714	Not Available	1198
3300006051|Ga0075364_10610841	Not Available	745
3300006177|Ga0075362_10145903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1133
3300006177|Ga0075362_10391978	All Organisms → cellular organisms → Bacteria	700
3300006194|Ga0075427_10119064	Not Available	502
3300006845|Ga0075421_100322267	All Organisms → cellular organisms → Bacteria	1873
3300006845|Ga0075421_100660395	Not Available	1221
3300006845|Ga0075421_100937336	Not Available	985
3300006846|Ga0075430_100392882	Not Available	1145
3300006846|Ga0075430_100455560	Not Available	1056
3300006846|Ga0075430_100622625	Not Available	890
3300006847|Ga0075431_100326694	Not Available	1546
3300006847|Ga0075431_100333005	Not Available	1529
3300006847|Ga0075431_100732768	Not Available	965
3300006880|Ga0075429_100585384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	978
3300009094|Ga0111539_10074881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3989
3300009094|Ga0111539_12202395	Not Available	639
3300009100|Ga0075418_10335324	Not Available	1614
3300009100|Ga0075418_11926999	Not Available	643
3300009147|Ga0114129_10708274	Not Available	1293
3300009147|Ga0114129_11174489	Not Available	957
3300009792|Ga0126374_11197381	Not Available	608
3300010043|Ga0126380_10100742	Not Available	1732
3300010043|Ga0126380_10228736	Not Available	1270
3300010043|Ga0126380_10595070	Not Available	870
3300010047|Ga0126382_10188735	Not Available	1454
3300010047|Ga0126382_10233233	Not Available	1335
3300010047|Ga0126382_10391421	Not Available	1081
3300010047|Ga0126382_10749466	Not Available	826
3300010047|Ga0126382_12499989	Not Available	504
3300010359|Ga0126376_10133456	Not Available	1959
3300010359|Ga0126376_12778016	Not Available	539
3300010362|Ga0126377_10132140	Not Available	2321
3300010362|Ga0126377_10853164	Not Available	971
3300010362|Ga0126377_11157074	Not Available	843
3300010366|Ga0126379_11815069	Not Available	714
3300010366|Ga0126379_13523285	Not Available	524
3300012212|Ga0150985_105349432	Not Available	611
3300012948|Ga0126375_10667968	Not Available	804
3300012948|Ga0126375_11661452	Not Available	552
3300012961|Ga0164302_10716616	Not Available	743
3300015371|Ga0132258_10222615	All Organisms → cellular organisms → Bacteria → Proteobacteria	4592
3300015371|Ga0132258_10441876	Not Available	3241
3300015371|Ga0132258_11109132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2000
3300015371|Ga0132258_11732007	Not Available	1576
3300015372|Ga0132256_101810416	Not Available	719
3300015373|Ga0132257_100908376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1104
3300015373|Ga0132257_103124101	Not Available	603
3300015374|Ga0132255_100325706	Not Available	2218
3300015374|Ga0132255_102945800	Not Available	727
3300027909|Ga0209382_10042916	All Organisms → cellular organisms → Bacteria → Proteobacteria	5416
3300027909|Ga0209382_10194531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2327
3300027909|Ga0209382_10807257	Not Available	998
3300027909|Ga0209382_11394362	Not Available	704
3300027909|Ga0209382_11541375	Not Available	660
3300028814|Ga0307302_10058815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1795
3300031890|Ga0306925_10846601	Not Available	945

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.56%
Host-Associated	Host-Associated	44.44%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.56%
Plants	Host-Associated → Plants	44.44%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.52%
Roots	Host-Associated → Plants → Roots	4.63%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	31.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.37%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.33%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	31.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	31.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.37%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.67%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	10.19%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.41%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300012212	Combined assembly of Hopland grassland soil	Host-Associated
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015372	Soil combined assembly	Host-Associated
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02382660	2088090014	Soil	MGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALA
INPgaii200_06819782	2228664022	Soil	LLFGNQMWPDDKLTFVYDAAGSIGVVMEFSESDFEAYSMPDLALVGAFQSKAQAAQALGTRTHRFRH
INPhiseqgaiiFebDRAFT_1004298452	3300000364	Soil	MWPDDKLTFVYDAAGSIGVVMEFSESDFEAYSMPDLALVGAFQSKAQAAQALGTRTHRFRH*
AF_2010_repII_A01DRAFT_10465981	3300000580	Forest Soil	MIYIDCTTNLLRCKMGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
JGI1027J12803_1010524571	3300000955	Soil	FVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQITH*
JGI25405J52794_100101722	3300003911	Tabebuia Heterophylla Rhizosphere	MGKPEKLTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRTHQFRH*
JGI25405J52794_100720642	3300003911	Tabebuia Heterophylla Rhizosphere	MIDIDCTTNLLRCKMGQREKLIFVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
JGI25405J52794_101168781	3300003911	Tabebuia Heterophylla Rhizosphere	GICCGWEMRQRERLIFVYDANGSIGVVMEFSESDFEAYSMPDLALIGAFQTKVQAAQALATRMHPLRN*
Ga0066388_1014010992	3300005332	Tropical Forest Soil	MGQRENLTFVYDGNGAIGVVMKFSESDFEAYSMPDLALIGAFQTKAQAAQALATTLHPFRH*
Ga0066388_1017360971	3300005332	Tropical Forest Soil	NLFSGAEMGKPEKLTLVCDADGSIGVVLEFSDSDFEAYSMPDLALVGAFQTKAQAAQALGARTHQYRH*
Ga0066388_1026332331	3300005332	Tropical Forest Soil	WLTRNLFSGAEMGKPEKLTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRTHQLRH*
Ga0066388_1031503351	3300005332	Tropical Forest Soil	MGKSELGALKMKQREKLTVVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALASRSRQPRN*
Ga0066388_1032045461	3300005332	Tropical Forest Soil	MIRGGAMPKRQKLTLVCDADGSIGVVMEFADDDFEAYALPDLALVGVFETKAHAAQALGTHTRQSKH*
Ga0066388_1040485251	3300005332	Tropical Forest Soil	VGNMAQREKPIFVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAA*
Ga0066388_1051597162	3300005332	Tropical Forest Soil	MNRENLSGGVGMMGREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQFRH*
Ga0066388_1075165731	3300005332	Tropical Forest Soil	MAHCENLMFVYDAEGAIGLVIQFSESDFEAYSMPDLALVGTFATKAEAVLALETQSHQFKH*
Ga0066905_1001015723	3300005713	Tropical Forest Soil	MEQREKLTFVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAQALTSRSRQLRHY*
Ga0066905_1001763373	3300005713	Tropical Forest Soil	MAHCEKLMFVYDAEGAIGLVIQFSENDFEAYSMPDLALVGTFETKAEAVQALETQSHQFKH*
Ga0066905_1004273562	3300005713	Tropical Forest Soil	MIYIDCTTNLLRCKMGQREKLIFVYGAHGSIGVVMEFSQGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
Ga0066905_1004410751	3300005713	Tropical Forest Soil	MRKREKLSFVHDTCGAIGVVMEFSETDFEAYSMPDLALIGAFRTKAEAAQALALGSHRLKH*
Ga0066905_1006197532	3300005713	Tropical Forest Soil	LVRRNLLRWKMGQRENLTFVYDGNGAIGVVMKFSESDFEAYSMPDLALIGAFQTKAQAAQALATTLHPFRH*
Ga0066905_1006221933	3300005713	Tropical Forest Soil	MAQREKLTFVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAQALATRTHLFRH*
Ga0066905_1007491942	3300005713	Tropical Forest Soil	MGKREKLMVVYDADGSIGVVIEFSEGDFEAYSMPDLALVGAFQTKAQAAQALARRTHHIRH*
Ga0066905_1008340611	3300005713	Tropical Forest Soil	MGQREKLTFVYDADGSIGVVMEFSESDFEAYSMPDLALVGAFHTKAQAAQALGARIHQFRH*
Ga0066905_1009302822	3300005713	Tropical Forest Soil	MGKREKLTFVYDTDGSIGLVIEFSESDFEAYSMPDLALVGAFQTKAQAAQALARTDSAICC*
Ga0066905_1012641831	3300005713	Tropical Forest Soil	DADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRTHQFRH*
Ga0066905_1012643271	3300005713	Tropical Forest Soil	REKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
Ga0066905_1014127251	3300005713	Tropical Forest Soil	MGKPEKLTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRT
Ga0066905_1015516321	3300005713	Tropical Forest Soil	MAQREKPIFVFDANGSIGVVMEFSESDFEAYSMPDLALLGAFRTKAQAAQALASRSRQLRH*
Ga0066905_1017658622	3300005713	Tropical Forest Soil	MGEREKLTFVYDADGSKGVVMEFSESDFEAYSMPDFALVGTFQTKVQAAQALATRTHQFRH*
Ga0066903_1005399253	3300005764	Tropical Forest Soil	MPKRQKLTLVCDADGSIGVVMEFADDDFEAYALPDLALVGVFETKAHAAQALGTHTRQSKH*
Ga0066903_1007024803	3300005764	Tropical Forest Soil	MAQREKLMFVYDADGSIGVVMEFSESDFEAYAMPDLALVGAFQTKVQAAQALGARTHPLRH*
Ga0066903_1011636522	3300005764	Tropical Forest Soil	MGKREKLTFVYDTDGSIGLVIEFSESDFEAYSMPNLALVGAFQSKAQAAQALDTRTESAICC*
Ga0066903_1017465371	3300005764	Tropical Forest Soil	LTDREISAVGVDMTQREKPIFVYDANGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALASRSRQLRH*
Ga0066903_1020943962	3300005764	Tropical Forest Soil	MGKREKLMVVYDADGSIGVVIEFSEGDFEAYSMPDLALVGAFQTKAQAAQALARRTHQIRH*
Ga0066903_1024003831	3300005764	Tropical Forest Soil	MAHCEKLMFVYDAEGAIGLVIQFSERDFEAYSMPDLALLGTFETKAEAVQALETQSHQFNH*
Ga0066903_1029546922	3300005764	Tropical Forest Soil	MGERENLTFVYDANGSVGVVMQFSESDFEAYSMPDLALIGAFQTKAQAAQALATTLHPFRH*
Ga0066903_1033425613	3300005764	Tropical Forest Soil	MGKPEKLTLVCDADGSIGVVLEFSDSDFEAYSMPDLALVGAFQTKAQAAQALGARTHQFRH*
Ga0066903_1049908992	3300005764	Tropical Forest Soil	MREKLTFVYGAEGAVGLVIEFSESDFEAYSMPDLDLIGAFQTKAQAAQALDTGTNSAIC*
Ga0066903_1050526033	3300005764	Tropical Forest Soil	EKLTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRTHQFRH*
Ga0066903_1051747581	3300005764	Tropical Forest Soil	EMAQREKLMFVYDADGSIGVVMEFSESDFEAYAMPDLALVGAFQTKVQAAQALGARTHQLRH*
Ga0066903_1067495082	3300005764	Tropical Forest Soil	MAQREKLMFVYDADGSVGVVMEFSESDFEAYSMPGLALIGTFQTKAQAAQALATRGHQIRH*
Ga0081455_100186929	3300005937	Tabebuia Heterophylla Rhizosphere	MGHREKLTFVYDADGSIGVVMEFSERDFEAYSMPDLALVGAFQTKAQAAQALGARIHQFRH*
Ga0081455_100820272	3300005937	Tabebuia Heterophylla Rhizosphere	MRQRERLIFVYDANGSIGVVMEFSESDFEAYSMPDLALIGAFQTKVQAAQALATRMHPLRN*
Ga0081455_101237412	3300005937	Tabebuia Heterophylla Rhizosphere	MAHCEKLMFVYDAEGAIGLVIQFSESDFEAYSMPDLALVGTFETKAEAVQALETQSHQFKH*
Ga0081455_101776792	3300005937	Tabebuia Heterophylla Rhizosphere	MCFGGSEMGEREKLTFVYDADGSLGVVMEFSESDFEAYSMPDFALVGTFQTKAQAAQALATRTHQFRH*
Ga0081455_101924922	3300005937	Tabebuia Heterophylla Rhizosphere	MGQRENLTFVYDGNGAIGVVMKFSESDFEAYSMPDLALIGAFQTKAQAAQALATTLHTSRH*
Ga0081455_101998462	3300005937	Tabebuia Heterophylla Rhizosphere	MIYVDCITNLLRCKMGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
Ga0081455_106766002	3300005937	Tabebuia Heterophylla Rhizosphere	AQREKLMFVYDADGSIGVVMEFSESDFEAYAMPDLALVGAFQTKVQAAQALGARTHQLRH
Ga0081455_109925001	3300005937	Tabebuia Heterophylla Rhizosphere	MLRCKMGQPEKLIFVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
Ga0075365_101308713	3300006038	Populus Endosphere	MELSRQQWNFLAYCALMDRENLSGGVGMMGREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQITH*
Ga0075364_102527141	3300006051	Populus Endosphere	MGKPEKLTLVCDANGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGA
Ga0075364_106108412	3300006051	Populus Endosphere	VRRNLLRWKMGQRENLTFVYDGNGAIGVVMKFSESDFEAYSMPDLALIGAFQTKAQAAQALATTLHPFRH*
Ga0075362_101459032	3300006177	Populus Endosphere	MGKPEKLTLVCDANGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGAPTHQFRH*
Ga0075362_103919781	3300006177	Populus Endosphere	IYIDCTTNLLRCKMGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
Ga0075427_101190642	3300006194	Populus Rhizosphere	LSGGVGIMDREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALA
Ga0075421_1003222673	3300006845	Populus Rhizosphere	MGKNLLSGGVGIMDREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQIRH*
Ga0075421_1006603951	3300006845	Populus Rhizosphere	MWQRERFTFVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAQALATRTHLLRH*
Ga0075421_1009373362	3300006845	Populus Rhizosphere	MAQREKPIFVYDADGFIGVVMEFSESDFEAYSMPHLALIGAFRTKAQAAQ
Ga0075430_1003928822	3300006846	Populus Rhizosphere	MDREISVSVWTWPSAKSRFVYDANGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALASRSRQLRH*
Ga0075430_1004555601	3300006846	Populus Rhizosphere	MELSRQQWNFLAYCALMDRENLSGGVGMMGREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQIRH*
Ga0075430_1006226251	3300006846	Populus Rhizosphere	SAACSGNAEARKLTFVYDDSGSIGVVMEFSESHFEAYSMPDLALIGAFQTKAQAAQALTSRSRQLVH*
Ga0075431_1003266941	3300006847	Populus Rhizosphere	MECSLSATGREKPIFAYDAGGSIGLEMAFSDSDFEAYSMPDLALIGAFRTKAQAAQALASRSRQLRH*
Ga0075431_1003330051	3300006847	Populus Rhizosphere	MGKNLLSGGVGIMDREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQI
Ga0075431_1007327681	3300006847	Populus Rhizosphere	REKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQITH*
Ga0075429_1005853841	3300006880	Populus Rhizosphere	MGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
Ga0111539_100748812	3300009094	Populus Rhizosphere	MGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFKTKAQAAEALAALTHQLSH*
Ga0111539_122023951	3300009094	Populus Rhizosphere	MGKPEKLTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGAPTHQFRH*
Ga0075418_103353242	3300009100	Populus Rhizosphere	MGQRENLTFVYDANGAIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAQALATTLHPFRH*
Ga0075418_119269992	3300009100	Populus Rhizosphere	MGKNLLSGGVGIMDREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKA
Ga0114129_107082743	3300009147	Populus Rhizosphere	LIDRENLSGGVGMMGREKLTFVYDADGAVGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAQALTSRSRQLVH*
Ga0114129_111744891	3300009147	Populus Rhizosphere	MGQREKLTFVYDIDGSIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAHALAAARTHPFNH*
Ga0126374_111973811	3300009792	Tropical Forest Soil	MGKPEKLTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGKRTHQFKH*
Ga0126380_101007422	3300010043	Tropical Forest Soil	MGQREKLIFVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH*
Ga0126380_102287363	3300010043	Tropical Forest Soil	MATNFVDNLHWLVGNLLCGAEMGKPEKLTLVCDADGSIGVVLEFSDCEFEAYSMPDLALVGAFQTKAQAAQALGARTHQYRH*
Ga0126380_105950702	3300010043	Tropical Forest Soil	EISAVGVDMTQREKPIFGYDANGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALAAARTHPFKH*
Ga0126382_101887351	3300010047	Tropical Forest Soil	MATNFVDNLHWLVGNLLCGAEMGKPEKLTLVCDADGSIGVVLEFSDCDFEAYSMPDLALVGAFQTKAQAAQALGARTHQFRH*
Ga0126382_102332332	3300010047	Tropical Forest Soil	MGRREKLILVYGANGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTH
Ga0126382_103914212	3300010047	Tropical Forest Soil	MAQREKPIFVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALASRSRQLRH*
Ga0126382_107494661	3300010047	Tropical Forest Soil	MGKREKLTFVYDTDGSIGLVIEFSESDFEAYSMPDLALVGAFRSKAQAAQALDTRTESAICC*
Ga0126382_124999891	3300010047	Tropical Forest Soil	LTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRTHQFRH*
Ga0126376_101334562	3300010359	Tropical Forest Soil	MGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAEAAEALATLTHQLRH*
Ga0126376_127780161	3300010359	Tropical Forest Soil	MPKRQKLTLVCDADGSIGVVMEFADDDFEAYAMPDLALVGVFETKAQAAQALGTHTRQSKH*
Ga0126377_101321403	3300010362	Tropical Forest Soil	MATNFVDNLHWLVGNLLCGAEMGKPEKLTLVCDADGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRTHQFRH*
Ga0126377_108531642	3300010362	Tropical Forest Soil	MGKREKLTFVYDTDGSIGLVIEFSESDFEAYSMPDLALVGAFQSKAQAAQALNTRTESAICC*
Ga0126377_111570741	3300010362	Tropical Forest Soil	MWRRDKLTFVCDADGSVGVVMEFSESDFEAYSMPELALVGVFQTKAQAAHALGAHAHQFRH*
Ga0126379_118150692	3300010366	Tropical Forest Soil	MAKREKLMFVYDADGSIGVVMEFSESDFEAYALPDLALVGVFQTKAQAAQALGAPIRPFRH*
Ga0126379_135232852	3300010366	Tropical Forest Soil	WLGMIRGGAMPKRQKLTLVCDADGSIGVVMEFADDDFEAYALPDLALVGVFETKAHAAQALGTHTRQSKH*
Ga0150985_1053494321	3300012212	Avena Fatua Rhizosphere	MGQREKLSLVYDADGSIGVVMEFSESDFEAYSMPDLALVGAFQTKAQAAQALGDL
Ga0126375_106679682	3300012948	Tropical Forest Soil	MATNFVDNLHWLVGNLLCGAEMGKPEKLTLVCDADGSIGVVLEFSDSDFEAYSMPDLALVGAFQTKAQAAQALGARTHQFRH*
Ga0126375_116614521	3300012948	Tropical Forest Soil	MAQRENPIFVCDADGSIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAEALAAARTHPFKH*
Ga0164302_107166161	3300012961	Soil	MGQREKLSLVYDADGSIGVVMEFSESDFEAYSMPDLALVGAFQTKAQAAQALGDLLFNSSQR
Ga0132258_102226156	3300015371	Arabidopsis Rhizosphere	MAQREKLMFVYDADGSVGVVMEFSESDFEAYSMPDLALIGTFRTKAQAAQALAARRHQIRH*
Ga0132258_104418762	3300015371	Arabidopsis Rhizosphere	MELSRQQWNFLAYCALMESGKLSGGVGMMGREKLTFVYDANGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQITH*
Ga0132258_111091321	3300015371	Arabidopsis Rhizosphere	MGQREKLILVYGAHGSIGVVVEFSEGDFEAYSMPDLALIGAFKTKAQAAEALAALTHQLSH*
Ga0132258_117320073	3300015371	Arabidopsis Rhizosphere	LTDREISAVGVDMAQREKPIFVYDANGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALASRSRQLRH*
Ga0132256_1018104161	3300015372	Arabidopsis Rhizosphere	MAQREKPIFVYDANGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALASRSRQLRH*
Ga0132257_1009083761	3300015373	Arabidopsis Rhizosphere	NLHWLTGNLLCGAKMGKPEKLTLVCDANGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGTRTHQFRH*
Ga0132257_1031241011	3300015373	Arabidopsis Rhizosphere	MGQRENLTFVYDGNGAIGVVMKFSESDFEAYSMPDLALIGAFQTKAQAAQALATTLHPFRHRRAGCRRWAQHW*
Ga0132255_1003257063	3300015374	Arabidopsis Rhizosphere	MELSRQQWNFLAYCALMESGKLSGGVGMMGREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQITH*
Ga0132255_1029458002	3300015374	Arabidopsis Rhizosphere	VYDANGSIGVVMEFSESDFEAYSMPDLALIGAFRTKAQAAQALASRSRQLRH*
Ga0209382_100429164	3300027909	Populus Rhizosphere	MIYIDCTTNLLRCKMGRREKLILVYGAHGSIGVVMEFSEGDFEAYSMPDLALIGAFQTKAQAAEALATLTHQLRH
Ga0209382_101945311	3300027909	Populus Rhizosphere	MGKPEKLTLVCDANGSIGVVLEFSDTDFEAYSMPDLALVGAFQTKAQAAQALGAPTHQFR
Ga0209382_108072572	3300027909	Populus Rhizosphere	MECSLSATGREKPIFAYDAGGSIGLEMAFSDSDFEAYSMPDLALIGTFRTKAQAAQALAGSTDPPVKH
Ga0209382_113943622	3300027909	Populus Rhizosphere	MDREKLTFVYDADGAVGVVMEFSESEFEAYSMPDLALVGAFQTKAQAAQALATRAHQIRH
Ga0209382_115413751	3300027909	Populus Rhizosphere	MWQRERFTFVYDADGSIGVVMEFSESDFEAYSMPDLALIGAFQTKAQAAQALATRTHLLR
Ga0307302_100588153	3300028814	Soil	MSQREKLSLVYDADGSIGVVMEFSESDFEAYSMPDLALVGAFQTKAQAAQALGDLPLNSSQR
Ga0306925_108466012	3300031890	Soil	MGHRDKLTFVYDADGSIGVVMEFSESDLGAYSLPDLALVGAFQTKGQGASRMHQFRH