Scaffold GPIPI_17044922

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold GPIPI_17044922

Scaffold GPIPI_17044922

Overview

Basic Information
Taxon OID	2088090014 Open in IMG/M
Scaffold ID	GPIPI_17044922 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1002
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003586	Metagenome / Metatranscriptome	478	Y
F011812	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_00301790	F003586	AGGAGG	MAKKKLTEAERAEFAAQRARMLANAQRTRELAERAQAKLDAKSSQR
GPIPI_00301800	F011812	N/A	ADASAVPESVIEREEVVALLFNVSDIVAALSRIERLLKEDDGEEEAD

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.