Scaffold LJN_F7QKVOU01CXJR8

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LJN_F7QKVOU01CXJR8

Scaffold LJN_F7QKVOU01CXJR8

Overview

Basic Information
Taxon OID	2088090003 Open in IMG/M
Scaffold ID	LJN_F7QKVOU01CXJR8 Open in IMG/M
Source Dataset Name	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	505
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location Name	Sierra Nevada National Park, Granada, Spain
Coordinates	Lat. (^o)	36.96971	Long. (^o)	-3.46027	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033537	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
LJN_03990840	F033537	AGGAG	MDTTQHDEGDVRPGDLLVGANAIRAFLVSLGMPEKTAEPYYLKRSGWPIGNTAKGGGKLIASKRRLSSHTSKIARGSSAA

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