Scaffold OSPD_GOCTFRE02GPBA1

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold OSPD_GOCTFRE02GPBA1

Scaffold OSPD_GOCTFRE02GPBA1

Overview

Basic Information
Taxon OID	2084038022 Open in IMG/M
Scaffold ID	OSPD_GOCTFRE02GPBA1 Open in IMG/M
Source Dataset Name	Hot spring microbial community from Yellowstone National Park, USA - OSP
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	516
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Community From Yellowstone National Park, Us

Source Dataset Sampling Location
Location Name	Yellowstone National Park
Coordinates	Lat. (^o)	44.560318	Long. (^o)	-110.708889	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y

Sequences

Protein ID	Family	RBS	Sequence
OSPD_00765930	F008949	N/A	MSSQTVKLGTQTITPKVQDLGNTYYIEFQLKITKYLNNPVNHTIDVKFVCNKYKQVVVPSANPLSPPTVQTVQKTIQECVDEWYNIHKSVYEVA

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