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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2084038022 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046245 | Gp0051902 | Ga0010981 |
| Sample Name | Hot spring microbial community from Yellowstone National Park, USA - OSP |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 29471542 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 13 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hot Spring Microbial Community From Yellowstone National Park, Us |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Community From Yellowstone National Park, Us |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.560318 | Long. (o) | -110.708889 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008949 | Metagenome / Metatranscriptome | 325 | Y |
| F020733 | Metagenome / Metatranscriptome | 222 | Y |
| F023140 | Metagenome / Metatranscriptome | 211 | Y |
| F026309 | Metagenome / Metatranscriptome | 198 | Y |
| F026923 | Metagenome | 196 | N |
| F039967 | Metagenome | 162 | N |
| F042427 | Metagenome / Metatranscriptome | 158 | Y |
| F066922 | Metagenome / Metatranscriptome | 126 | Y |
| F076263 | Metagenome / Metatranscriptome | 118 | Y |
| F076264 | Metagenome / Metatranscriptome | 118 | Y |
| F077502 | Metagenome / Metatranscriptome | 117 | N |
| F084460 | Metagenome / Metatranscriptome | 112 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| OSPD_GOCTFRE01D2WTU | Not Available | 527 | Open in IMG/M |
| OSPD_GOCTFRE01D9R05 | Not Available | 507 | Open in IMG/M |
| OSPD_GOCTFRE01ECLLP | Not Available | 530 | Open in IMG/M |
| OSPD_GOCTFRE02FMUN2 | Not Available | 530 | Open in IMG/M |
| OSPD_GOCTFRE02FVGYT | Not Available | 533 | Open in IMG/M |
| OSPD_GOCTFRE02G4FKH | Not Available | 516 | Open in IMG/M |
| OSPD_GOCTFRE02GPBA1 | Not Available | 516 | Open in IMG/M |
| OSPD_GOCTFRE02GT06N | Not Available | 528 | Open in IMG/M |
| OSPD_GOCTFRE02I0H1X | Not Available | 529 | Open in IMG/M |
| OSPD_GOCTFRE02I10SM | Not Available | 547 | Open in IMG/M |
| OSPD_GOCTFRE02I5L9Z | Not Available | 513 | Open in IMG/M |
| OSPD_GOCTFRE02JDH6C | Not Available | 532 | Open in IMG/M |
| OSPD_GOCTFRE02JDJ8X | Not Available | 525 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| OSPD_GOCTFRE01D2WTU | OSPD_00350240 | F077502 | MVNQGTDVAHIILWIEKNLPEEGKLSELIDNIFSLIQEIILNNLSQGRQPISFESVREIADAFKEIVYRSIERTIGVLTEDVKEQVDAYFFKKLSEIYSKYYE |
| OSPD_GOCTFRE01D9R05 | OSPD_00345300 | F020733 | MSEIVWDDEKKEYVRAEDLRERKLIQKIIAELIQALQSDYTLQIQINLQNGQGTITIVPKQQT |
| OSPD_GOCTFRE01ECLLP | OSPD_00798070 | F026923 | MFNEIEQKIRNEVVKLLPYPDVKLILTSFCLHRTVDDMYVVILKYKADVRYLDLRDIKNIDVVIRSDGVYAVL |
| OSPD_GOCTFRE02FMUN2 | OSPD_00737490 | F077502 | VVTMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEIKEQVDAYF |
| OSPD_GOCTFRE02FVGYT | OSPD_00215950 | F084460 | MSDDLLKKIDEIVNKAIAKHLAEMSRQYTPQEINIKFTKNWILVFLPNGYLKISKKLSEGSYKLKILQYKEKK |
| OSPD_GOCTFRE02G4FKH | OSPD_00650730 | F076263 | MVSLEDLSAILDDLEDLCARLPEGVTFHPTLELRRGYANEEATYIKFDCRNHRYVLTVVREGVAKTTRFSSREEMFRRLFPDYMGEGII |
| OSPD_GOCTFRE02GPBA1 | OSPD_00765930 | F008949 | MSSQTVKLGTQTITPKVQDLGNTYYIEFQLKITKYLNNPVNHTIDVKFVCNKYKQVVVPSANPLSPPTVQTVQKTIQECVDEWYNIHKSVYEVA |
| OSPD_GOCTFRE02GT06N | OSPD_00111220 | F042427 | MTTKVIETNSDTGGASSSEPLLLALPECECICHVNGNPYSCGAMCWHPQSDSTEYVIELASSTNNTDHYVQLFAIYSGGKLRYIVFAPSNGSVQRFEVS |
| OSPD_GOCTFRE02I0H1X | OSPD_00018510 | F026309 | VSLPAPLSSPSFLMGVIIFIVASILLYAGKIPLSVWTTVVGVFLGYYFGYQYGQYVLRRG |
| OSPD_GOCTFRE02I10SM | OSPD_00302320 | F066922 | DVRVGDELERLKDVMTQKVQQFASDRTIRRYISRLEKLELGKVTSEQVLRLLAIFLSTPLGQWLAVVVVLELLAKYKFFSQISVDVLIGVITASELVQALAKAGIVPEIAGLAGLFG |
| OSPD_GOCTFRE02I5L9Z | OSPD_00670900 | F039967 | MMASIGVGVGLVAPYGAIEKVTVPEGLKLSQDIMASAVTLLLGLTVFGTSVRNMLQPPYGGTWAWLNTSTSV |
| OSPD_GOCTFRE02JDH6C | OSPD_00392470 | F076264 | AISSAIQNMVNGLQNLFVALIDVFGNAINAIGNTLASLANPIGYLVGVLAVFGSLIAIIYYVFRGRGGVSGLIGGIRNFFTSFF |
| OSPD_GOCTFRE02JDJ8X | OSPD_00682290 | F023140 | LHRRILLSNVFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLILFFYFLGVKFVGTWAVLQKFAVTLPTSFVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLLIM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |