NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SPCE_L_FSPRUNR02G0A9U

Scaffold SPCE_L_FSPRUNR02G0A9U


Overview

Basic Information
Taxon OID2084038016 Open in IMG/M
Scaffold IDSPCE_L_FSPRUNR02G0A9U Open in IMG/M
Source Dataset NameSoil microbial communities from Hopland, California, USA, that is PCE polluted - amended with lactate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Contaminated → Soil → Soil Microbial Community From Hopland, California, Usa, That Is Pce Polluted

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.9727Long. (o)-123.1145Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023474Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
SPCE_L_00147830F023474AGGLVGILHPEVANDRLEINTLAGNDTVDPSGLAAGAIQLFVDGVLVP

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