Scaffold SPCE_NA_FSPRUNR02I4NKC

Overview

Basic Information

• Taxon OID: 2084038014
• Scaffold ID: SPCE_NA_FSPRUNR02I4NKC
• Source Dataset Name: Soil microbial community from Hopland, California, USA, that is PCE polluted - No amended
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: GATC-Biotech AG, Konstanz, Germany
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 526
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Contaminated → Soil → Soil Microbial Community From Hopland, California, Usa, That Is Pce Polluted

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.9727
  • Long. (^o): -123.1145

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042226	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
SPCE_NA_00044250	F042226	AGG	MRDLRAAERRIKGGVRTLLVSLVALSALLVLPAASAKDFHPGDLRVCNSTHCVAVVNREELPELGSFYYGVATPARVRRPKLRAPYYELRFRNGYVTGIVAKQRLDRFLSYGVNLNRFARGEWYAVPRQMSSELRRLTVGMRPLRLTRAALAKSR