NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BRPC2_GFP31SK02J2GWU

Scaffold BRPC2_GFP31SK02J2GWU


Overview

Basic Information
Taxon OID2084038000 Open in IMG/M
Scaffold IDBRPC2_GFP31SK02J2GWU Open in IMG/M
Source Dataset NameBovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)513
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium ADurb.Bin168(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Source Dataset Sampling Location
Location NameUniversity of Illinois Dairy Farm in Urbana, IL
CoordinatesLat. (o)40.0886Long. (o)-88.2202Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094633Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
BRPC2_02714440F094633N/ADYLPHVDDYVNDGYDRLVKVWTKNHVPQETYPRLEKDEDVPNLPLWTHRALCDWATWLVYRNGNPQKQNRGLYFKQAFDEIVAQIAGEGGSAGLNEDGTQKQYRNFINIPR

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