Scaffold BRPC2_GFP31SK02I15EU

Overview

Basic Information

• Taxon OID: 2084038000
• Scaffold ID: BRPC2_GFP31SK02I15EU
• Source Dataset Name: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 501
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Source Dataset Sampling Location

• Location Name: University of Illinois Dairy Farm in Urbana, IL
• Coordinates
  • Lat. (^o): 40.0886
  • Long. (^o): -88.2202

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049349	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
BRPC2_03118640	F049349	GAGG	MDEFGCFYCWDARKKKEKEYLWFFDAANNLKQCEYCPKCGRKYGEEPVNEPLELADEQQY