Scaffold OV011_2_1_1_newblercontig03292

Overview

Basic Information

• Taxon OID: 2081372001
• Scaffold ID: OV011_2_1_1_newblercontig03292
• Source Dataset Name: Marine microbial communities from Deepwater Horizon Oil Spill, sample DHOS OV011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 935
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Spill

Source Dataset Sampling Location

• Location Name: Deepwater Horizon Oil Spill, Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.672222
  • Long. (^o): -88.4375

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063768	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
OV011_00212450	F063768	GAGG	MGDGRVSDPVTTAEGAGEFIVLAEFSTALSGLLAGWSTDGADPDTSATMASLAARLGEHAGWWMDRTPESVLLEGEQAAASGAGRLTDILALLDVPPSDRRSAVAPVLDRLVAYLGVLSERLSPVGDAPALRTIRLVLADLEDRPR