Scaffold rumenHiSeq_NODE_4372654_len_194843_cov_1

Basic Information
Taxon OID	2061766007 Open in IMG/M
Scaffold ID	rumenHiSeq_NODE_4372654_len_194843_cov_1_053849 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

2061766007 Open in IMG/M

Scaffold ID

rumenHiSeq_NODE_4372654_len_194843_cov_1_053849 Open in IMG/M

Source Dataset Name

Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	194893
Total Scaffold Genes	353 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	99 (28.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

194893

Total Scaffold Genes

353 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

99 (28.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location Name	University of Illinois at Urbana - Champaign, Illinois, USA
Coordinates	Lat. (^o)	40.096	Long. (^o)	-88.2315	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Illinois at Urbana - Champaign, Illinois, USA

Coordinates

Lat. (^o)

40.096

Long. (^o)

-88.2315

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027710	Metagenome / Metatranscriptome	193	Y
F042680	Metagenome / Metatranscriptome	157	Y
F048027	Metagenome / Metatranscriptome	148	Y
F066344	Metagenome / Metatranscriptome	126	Y
F082826	Metagenome / Metatranscriptome	113	Y
F089629	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_24710530	F089629	N/A	MKKSNLSVSELLNVVLDFFDTIEGCKELASCKFGYGFIARSTPNFRAPKATSREWFGLFGKEMPAIIKITKVTNAKAYDYAKAINRQLDRQGSNAEFKSDAMSGYEWIVPNIIKRATESGSLQLCVTFKNSDKTKFESFYIVADNTPHFATSAELDFIKSHLYEAPSKSVKQSGLGIAEDDILMVRNYKFSNIIAIDKTPRIEKLWKMVE
_HiSeq_24711080	F048027	AGGAG	MAKETKKTTIDARVRAIAESGSGKGVGMPKWFTLPQNRDKRNLHIAVCKHLTELSNKHGNYPITYLVYFAVGKNAHRVPTFLSGYTKFDEKKAETIFSWLKLFAKYHKNEKLFRNPNVAHALCRFYDKYSTKTKDFKAALAASPSNPNIDVKNAKMSVETLGIAKTANAEEMEMAMAAAE
_HiSeq_24711130	F082826	AGGAGG	MVKFRIRCNFNASYEVEVMANDEGEALEKATNMAEDADNREFVIYGQGESQIIAREDIY
_HiSeq_24712510	F066344	N/A	MGKFLDLMSQNDSKALVARASQINTQAQIAQANIVQKLKNDIAEVEIEVQNLTDFAPDTTQSLRPGVKGWNPAKWASDLQNAKTRLYELTIELKIAEDTMEEFFGEGEKKTSKK
_HiSeq_24712620	F027710	AGAAG	MEKRKLYVLIDKSLKLVYGCVQGGHAVAQWMLEHPHSREWQNEYLIYLSADVPKWRRRLENLDVEYTEFKEPDLDFKVTALAVFGHEELFKRLKVVTED
_HiSeq_24712920	F042680	N/A	MIVQDIKPIVKGIAQLQYIMSGGIAVYHITSTDDKKYQLEIDLSDKHDVGETAAFKPTEKALLLMRWIRKANENNTLIEIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold rumenHiSeq_NODE_4372654_len_194843_cov_1_053849

Overview

Ecosystem & Geography

Associated Families

Sequences