Scaffold rumenHiSeq_NODE_4166104_len_39419_cov_1_068241

Overview

Basic Information

• Taxon OID: 2061766007
• Scaffold ID: rumenHiSeq_NODE_4166104_len_39419_cov_1_068241
• Source Dataset Name: Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39469
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (59.49%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location

• Location Name: University of Illinois at Urbana - Champaign, Illinois, USA
• Coordinates
  • Lat. (^o): 40.096
  • Long. (^o): -88.2315

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F065312	Metagenome / Metatranscriptome	127	Y
F086398	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_07462320	F086398	GGAGG	MKEQMTYHVAVQRADRVKHIVEEIGMGQIIKEKYIGYGIGQAGRYICLTDTGITIIKDEAKLKIITIYVTTQHELVAVFGGTKKIPPFLRKKVDYNQTKYTQAGKTIWK
_HiSeq_07462330	F065312	AGGAG	MRKKIKQAAKTWIEVFQGQRKQFPQGCAVTRIIPDKRFKQPKYKGKEWE
_HiSeq_07462550	F012184	AGGAGG	MTKNDVLSVILSIAGAEKCRQNKSNFIAIPCEDGIVKVSVGTALAEDTKNRKAFNFEAAIAEYKAHEAEVALRAAERANKPVKVAGPNPEAEARRQALDAQVAGLPSFTDYTATDILNALAGQVAENVTVMAVGSSAKRLVEQGVLTMTMDEKKKKHYTKA