Scaffold rumenHiSeq_NODE_3655088_len_22020_cov_1_698093

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold rumenHiSeq_NODE_3655088_len_22020_cov_1_698093

Scaffold rumenHiSeq_NODE_3655088_len_22020_cov_1_698093

Overview

Basic Information
Taxon OID	2061766007 Open in IMG/M
Scaffold ID	rumenHiSeq_NODE_3655088_len_22020_cov_1_698093 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	22070
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (80.39%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Switchgrass-Associated Bovine Rumen Microbial Communities From Urbana, Illinois, Usa

Source Dataset Sampling Location
Location Name	University of Illinois at Urbana - Champaign, Illinois, USA
Coordinates	Lat. (^o)	40.096	Long. (^o)	-88.2315	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F065312	Metagenome / Metatranscriptome	127	Y
F086398	Metagenome / Metatranscriptome	110	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
_HiSeq_22529440	F087968	AGGAGG	MIKITKTHARTLYNAGKEIMIIPNKMRTDSFMANWTTKPTDDPSADFDKLCNAIAYYNCSPETGMALAYYVKEM
_HiSeq_22529460	F086398	AGGAGG	MEMTYHVAVQRADRVKHIIEEIGIGQIIKEKYTRFNIGQAGRWVCLTDTGITIIKDEPKQKVITMYVTTQRELVAVYGGTKKVPNFLRKKVDYNQSKFTQAGKTIWR
_HiSeq_22529480	F065312	AGGAGG	MSKKKNPKPKTWVEVFQAERKEFPQGYCVMRIIPDKRNRKPKHKGRELEE
_HiSeq_22529500	F012184	AGGAG	MTINELKNMISGIEGAVNARANKVNFVVIPCEDGIVKVNTVVASEKDGNHRKAFNMEAAVAEYKAWEAEGALRAAERANKPAKVKGPNPEAQARRDELDAAITAMPAFTDYTATDISKVVKVSYDATPMLVGSAAKRLVEKGVLTVSSRENDKKPYYTKA

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